RNA id: XM_039811990.1


Basic Information

Item Value
RNA id XM_039811990.1
length 3199
RNA type mRNA
GC content 0.41
exon number 4
gene id gpank1
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15410498 ~ 15414963 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACGTTCGATGCTCGGTTTACaaacagagaaagaagagagggtaacgttagcttgaaGTAGCATCGTATTATTAGCTAACTCAGTTAGTAAATTCTGTTCCTAGTTAACGTCGTCATCTGGATGGGTGTCTTAAAGCGACGTAATGTTACCGAATTTAGTGCCTTAGCTAGCTAGGTCATTTGAAATTAACAAGCGTTCATGGGTATaaaagctaacgttaatgctgATGCTAATCTAAGCTAAAGCATAATAGCTCTGTTAGCTCAcaattagctagctaggttaaCTAAAGTTAACTTCTTTGCTAAGGCTACAAACGCTGGTTTTCAATCGTTGTATTATTCAGAGATAAAGTGACGCACTATAAATTGTGTTTTGTTAAATGTGTGAAATTATGTTTCAGAATTAACCAGACAGATAACCAGTCGCCCACCTAGCTATAGCTATATCAAAATAAGCAACTTAGCTACGCTAGCTTGAATGCTACGACATAGTACTATGTGAAACAAATAGTAAAAGAGAAGCAGCATTGAACTTTAGCTTAACCGTATGCTGTCATATCTAGAGCATTGTagcttttctttaaaaaaaaaaaaaggagtcttTCATTCAGACCAATTTGTATTGAAAAATAGTTTAACCTGCCACACCTGAAGTGTCACTCATTATGGCTGCACTAGGCTTTACTCCTGCCAGCGGGCAAGATCTTTTCAGCATTGAAACAACCGAAAAATCCAGCTGTGAAACAAGCAACGTACTTAATGGGAATGAGGTCAGGCAGTTTTACGAACATTTAATAAGAGATGGCGAAGGGCAAGATGTATCCAGGAGGAGTGCAATTAGCCAGAAAGATAATGGCAGAGAGCATCAGAATAAACAGAGGAACAGAGAGTCCAGTAGAAGAGCGAGGAGGAGAGCCAGGGCTGCAGAGATGCAGCAGGGTCAAACAGATTCTGTGGTGCAAAGAGTGATGAGTGGTGAAAGTGAAGCCAACCCAAGAAGACCGACAAGCAGTTCTTCAGAAAGAACCATGGAGCTCCTGGGGCTCAGGTTGCTGCGTTGTGCCCATGATGGGGACATCTCTGGCGTTAAAGACCTGCTCTCAAAGGGGGTCGACATCAACTTCCAGGATACTTACTTCTGGACTGCGATGATGTGTGCAAGCTGGTCGGGACAAAGAGCTGTGgtgaggctgctgctgcaacacgGAGCAGCCTGGGTCGGAGTGGTTGATACACAGGGCAGGGATGCCAAAGACCTGGCGCTGGAAGCGGGCCACAATGAGGTATTGGAGGAGTTGGAGAGCTATGGgagaagtacacacagagacacacaatctGATAGCAGTGCCCTCCAGCCTCAGTGGTGCGGTGTGTGTTGTAGCGAGTACAGCAGTAGCCTGTCATCACATCTCTCCTCCACTCTACATCTGTTCAGTCTGCGGCGTGCTCCACCCACCCCTTACTACTGCCTCCCCCCCTCCAGCAACAGCTACAAGATGATGGTTCGTTGCGGCTGGAAACCAGGGACAGGACTAGGGCCAGAGGGAGAGGGGCCTCAACAGCCAGTGCCAACTGTGCTGAAGAGAGACCAGAAAGGCCTTGGGTATGGACAGATGAAAAGAGCCAAAGTTACTCACTTCCAACCCAGGGATCGTGACGCAGTAAAACCACCATccaagaagaaagaggagagaggaggaaaaggacaGAGAAAGGAAGAAAGTAAGAGAAAGGAGCTAAAAGATAAGAACTGGGAAAGAGATTTCCGTGCCTCTTTCTATCTTTGACTCCTGCTTACTGTAACTTTTCTACAAGCCCTTTCTCTCAAACACATCTCAAAGTATCTCTAAAACAAACAATCTATTACAAAGTCAAGTTGGACCTGTTGTAAAGCTCCTGGAAGGTGTTTTCTCACcaattaatatgaatatcttGACTCTACCTCAAAGCTGAAACACCGTATATGGAATTAGTTGTGCCGCTGCCCACAGATGTGCAATGACCAAATGTATTTAATCTTTATCATGGTTGTGTTTTAAACTGTGTCACTAAATATGGCATATTTACTATTGATCCACTAAgacttggattttttttttacattaaaaaatacacTTGTTGAGGTTCATGATCtaggaaaatgttttaaatgtcaaACTGCTATTTTGATatgtttaatataataatacaatataaaGCATAAGAGGAAAATAGTTTAGATATTGAAAGTTGTATCAGTAATTTATCATGAGTGACTGCAGTAATGCTGTTCCTAATACGGTCCATGGTTCTTTAACATAGAATGTTGCAACAGTGAACTCTTCCTCTGGAATAGCTCCAGGTACCTTCTTACCTACTTTGACCCACCTGCACCCATGTGATGGGTGAGTCACGTCATATGCATGTGCATATCTGCCTTATCGTCACATTTGGCCAAGTAATCTAGATTGTTACATCTCATATAGCCTTATATCTCAGAAgccttttattcttttatttgttaGGGTTGGACATGTTTCAGGATTGTATTTAAATAAGCACAGCTCTAGCCACTTCAAAGCCCTGTAACCCATAAGCTCCAAGACTGCTAAACCCCGAAGTCCGTATCATTTTCTAAGTCACAACTTCAAGTTTTGTACACTGATTGaccaggaaaacaaaacaacctgTACACTGTACAGTCTGTattaaacaatattttgttaCATAGAGATGTTGATTTGCTGCTACACAGATTAGATGGACAatgcaatattagaaaaaacATGCAATGCAGTGCAATACAACacaagttattttatttatagagaCCAATATCACAATTTGCCTTAAGGGGCTTaacaatctgtacagcatacaGCACTCTCCTCAAATAAACCCTTTAAGTATAGCCTCATGAAACTGAGTCATCACCTAGATGACTTAGTAGGAGGGCATTGCATTGCATCAGACAGGTGTTTTTGATTTTTCTGGTCATTGAGCACATAGGCGTGTTTTGTAAAGGAATCTGTTGTCCTGTtactttttaacatgtttttacccTCTCTATTCCTCATTACATATTCACGCCATCCCTTCACAGCTTAAATAATTGCTGGGTTGTTTACTGGTCATTTCTATGCTCTACATGTTTTGTATGGTAGTCCTACAAGTGCACAGTTTTCTCATAAATTTCATAGACACGCACTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6420 lncRNA downstream 81207 15328188 ~ 15329291 (-) True G4729
TU6407 lncRNA downstream 89115 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA downstream 89115 15319305 ~ 15321383 (-) True G4722
TU6397 lncRNA downstream 147066 15199745 ~ 15263432 (-) True G4713
TU6391 lncRNA downstream 256352 15153544 ~ 15154146 (-) True G4710
TU6511 lncRNA upstream 315692 15730655 ~ 15730956 (-) True G4797
TU6512 lncRNA upstream 320392 15735355 ~ 15735682 (-) True G4798
TU6513 lncRNA upstream 320826 15735789 ~ 15736178 (-) True G4799
TU6529 lncRNA upstream 366434 15781397 ~ 15781753 (-) True G4815
TU6580 lncRNA upstream 578641 15993604 ~ 15994085 (-) True G4860
XM_039809861.1 mRNA downstream 9053 15395835 ~ 15401445 (-) True LOC120564677
XM_039809839.1 mRNA downstream 16825 15377200 ~ 15393673 (-) True foxk1
XM_039809847.1 mRNA downstream 16826 15377200 ~ 15393672 (-) False foxk1
XM_039797266.1 mRNA downstream 96593 15312432 ~ 15313905 (-) True LOC120557175
XM_039804872.1 mRNA downstream 98539 15310698 ~ 15311959 (-) True LOC120561684
XM_039810016.1 mRNA upstream 4289 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA upstream 4289 15419252 ~ 15424350 (-) True LOC120564766
XM_039803969.1 mRNA upstream 13393 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA upstream 13393 15428356 ~ 15685639 (-) True sdk1a
XM_039804658.1 mRNA upstream 401375 15816338 ~ 15899401 (-) True LOC120561525
TU6236 other downstream 506289 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 691396 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 1843232 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 2370264 13037280 ~ 13040234 (-) True LOC120560438
TU6504 other upstream 11581 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 930807 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2295683 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2415729 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2428973 17843936 ~ 17845404 (-) False LOC120556682

Expression Profile