RNA id: XM_039812116.1


Basic Information

Item Value
RNA id XM_039812116.1
length 1923
RNA type mRNA
GC content 0.44
exon number 14
gene id asah1b
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 33580853 ~ 33589041 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAACAGTAGCAGCTTCCGCAGTAAACTTCGTATATTAGCAGCCACGGTACAGCACCAGTCTGGGAGAaatcaaagccggtctacggagtTCTTTGGTGAAATCCTTCAAAAATGGGCCACtgtgtttttctcattttagcGGCTGTGTTTTCCGTCGCATGGACACagtttatcccgccgTACACAGAAGAATGTCGGGAAGAAATGTATCCACCAAAGGGTCCCACGTTCAGAGGAGCTGTCGGTTGGTACACAGTGGACCTCGACCTACCGCCCAGCAAGAGATGGACAGCTCTAatcactgacaaaaaaaatgatCTGGTCAACATGATCCAGGCCATCCGAGACTTGGCTAATGCGTTTGTGCCCAGTGGAAGGCTGATTGAGCTGGTTGACATTACGCTGCCTTTGATGGTGGACACTCTCCCAAACCCTTTCAGTGATGAAATCAAAGGAATTGCAGCTGCTTCAGGGATTCCTCTTGGTGAAGTCGTCTTGTTCAACATCTTCTATGAGGTGTTCACGGTGTGCACATCAGTTGTTGCAGAAGACAATAAGGGTAACCTCATTCATGGTAGAAATCTGGATTTTGGATTATTTATGGGCTGGGATGTGAAAAACAAGTCCTGGATCATTAGTGAGAAGCTGAAGCCTCTGGTTGTCAACCTCGACTTCAAGAGAAATAATCAGACCGTCTTCAAGTCTACAAACTTTGCTGGATACGTTGGCATGCTGACTGGCATCAAGCCTCacatattcactctgactatgAATGAGCGCTTCAGTCTCGATGGAGGATACATTGGAATCCTGGAGTGGATCTTAGGGAAGAGAGATGGGATGTGGATGAGCTTCCTCACTCGCTCAGTCCTAGAAAATGCAACTAGCTACGAGGAAGCCAAAAGTCTCCTGGCTCAGACCAAGCTGCTGGCTCCAGCTTACTTCATCCTCGGAGGAAACCAGACCGGCCAGGGCTGCATCATCACACGGTCCAGACTGCTCAGCATCGACCTCTTGGAgaTTGACCTGAAGCTGGGCCGGTGGTACGTCCTGGAAACAAACTACGACCACTGGAAGGAGCCTTTTTTCCTGGATGATCGCAGAACTCCTGCCATGAGGTGCATGAACCAGACCACACAGACAaatGTCTCCCTGCAGACCATGTATGATGTCCTCTCCACCAAACCAGTGCTAAACAAGttGACCACATACACGACACTGATGCAAGTGTCTGAGGGAAAACTGGAGTCGTATATCCGCGACTGCCCGAATCCCTGCATGCCCTGGTAACGCTCCAACCACTGAACCCTGATCAGTTTGTAAATGCCTATTTGCATGGAGAAGCTGTGATAAAGACAAGCTCAGCTGATCTTGGGGCAGTGTGGATTTTGTTCCTTTTGAACTGTTTGCACAGCTATCAAATCACATGAACCAAAGTTTGTCTTGATATATTGTGTTTTGGTTTCCAGACAATTCAGGAATACTTAAAAGCTTTGATGAAAATACTGaatcttattttgtttttgtttttttgtcattaggAAAATGTACAAAAGTGAATCAAACTTGTAAATGTTTTCCCTCAGTTATTTTTACTGTAATGGGTTATTTGCAAAATGAGTTAATCAGTGATCTCACCATTGGCATAGGGACCCCTGAGATAAAGGCATGTGTGTAATTCAATTAATGCAAAATATGGTTACATTCTTTAGTTAGATTTCTCAAATCCACTCACCATTTAGTGCCTCCACACTGTAGCCCTGCTttattagtttttgtttttgaatcCAGGTCAAACTCAAAATGTCGAACTAGGTTAGTTACAGTTACTGTCTCACATGATCACTGACCATTTTACACACTGATACTGACCAATGTACCTCATGGATTAAGATGGTTAATAAAATGATTCCCAAATGTA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0048668 collateral sprouting biological_process
GO:0005764 lysosome cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K12348 ASAH1; acid ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12922 lncRNA downstream 7066 33573173 ~ 33573787 (-) True G9584
TU12891 lncRNA downstream 54066 33526548 ~ 33526787 (-) True G9565
TU12858 lncRNA downstream 154853 33409522 ~ 33426000 (-) False G9537
TU12857 lncRNA downstream 154853 33425234 ~ 33426000 (-) True G9537
TU12864 lncRNA downstream 157131 33422805 ~ 33423722 (-) True G9540
TU12949 lncRNA upstream 26582 33615623 ~ 33615920 (-) True G9608
TU12953 lncRNA upstream 54039 33643080 ~ 33643396 (-) True G9612
TU12959 lncRNA upstream 76227 33665268 ~ 33665794 (-) True G9615
TU12962 lncRNA upstream 132802 33721843 ~ 33722073 (-) True G9618
XR_005641973.1 lncRNA upstream 182822 33771863 ~ 33773421 (-) True LOC120575231
XM_039787194.1 mRNA downstream 29296 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 29326 33548703 ~ 33551527 (-) False sart1
XM_039810300.1 mRNA downstream 33470 33539583 ~ 33547383 (-) False LOC120564990
XM_039799815.1 mRNA upstream 3601 33592642 ~ 33605132 (-) True frg1
XM_039810220.1 mRNA upstream 801107 34390148 ~ 34400994 (-) True LOC120564947
XM_039811009.1 mRNA upstream 816011 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 816011 34405052 ~ 34411360 (-) True tlr3
XM_039805730.1 mRNA upstream 927746 34516787 ~ 34521757 (-) True npy2r
TU12854 other downstream 62730 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 296773 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 445933 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 863809 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 1809599 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1888190 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1995429 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 2355007 35944048 ~ 35969266 (-) False micall1a

Expression Profile