RNA id: XM_039812327.1


Basic Information

Item Value
RNA id XM_039812327.1
length 1473
RNA type mRNA
GC content 0.56
exon number 8
gene id sde2
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2252052 ~ 2266353 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCCGCGCATGCGCCCTGAGCAGTATCAGTTGAAGAAGAAGCCAACATGGAGGTGTTTGTGACTTCTCCGAGctttagcttctgtaactggATGTTTCCGGACGGGTCTCTGGTCCGAGACGTTCTGACCCGGTTCGTCCAGCAGCGGggagTTTGTTCTCTGGAGGATTTCTACGTCATCAGAAATGGTCGCCTGTCTGAGCCTGAGGATGCTCTGCAGCGTGGAGCCGTCTATCACCTGGAGCCCCGCCTCTGTGGGGGGAAAGGAgggttCGGCTCCATGCTGAGAGCTCTGGGTGCTCAGATCGAGAAGACGACGAACCGCGAGGCGTGCAGAGATCTGAGCGGCCGCCGCCTCCGAGACGTCAACCACGAGAAAGAGATGGCCGAGTGGCTGAAGAAGCAGACGGAGCGCGAGGCGGAGAAGGAGCAGCGCCGCCTGGAGCGGCTCCAGAGGAAGCTGGCCGAGCCGCGGCACCAGTTCACCGACACAGAGTACCAGAGGCAGTGCCACGACCTGTCAGAGCGCCTCGAGGACTCGGTCATCAAAGgtCTGCAGGCGTCCTCCAGCAGTCAGGTGAAGGTGGACGACATCTCGCCGTCAAAGAGACCGAGCCGCGATCACAGCGAGCAGCCGCaaccgaagaagaagaagaaggcagCCGCCGCAGCCGCCTGTTACTGGACGGGCGTGGGCGACATGCTGAgctcagaggaggaggaggaagaagatgatgaagaagatTCCCCGTCCTCTTCCTCCAGCTGTggagctgctgctgatgctgttACCATGACGACACGCACAGAGGAGGCGGAGCAGAGCAGCAGCTCGTCTGCTGCCTCTGAGACCTGCAGTCCATCCTCACAGACCTGCAGAGAGCCCAAAGCTCCGGAAACCTCTGGACCTGCAGAGACCTCTAGACCAGCAGAGACTTCCAGACCTGCAGAGGAGTCCGTCTGTTCATCTCCACAGCAGGGTGGCCCTGCTGTGGACGTGTCCTCTCTGTCCTCGGTGGAGCAGCTGGAGTCTCTGGGTCTCAGCGTCCTGAAGGAGGAACTCATGTCTCGTGGGTTAAAGTGCGGGGGAACGCTGACTGAGCGCGCCGCGCGCCTCTTCTCTGTCAGAGGACTGACTCCAGATCAGATCGACCCGGCCCTGCTCGCCAAAACCGCCAAGACCAACAGGAAGTGAACTCATGAACACGCTGAAGTCTTTGTTTCTCATCGGACCCTTTCTGGATTCTTCTCCCCCGCTGAGACAGTGCAGCGCGTGTCATATTTAGTCGACTGTAACTAAACATTATCAACAAATCAGGCTTTTAGCTGGTTTGTGAATTCGTCCAATTAGAAGGCAGCATTTTCCAAATATTGTTTGATATTTCTGTCTGTACGGGACTTCTGTTCCCAAAAGGTGAACTGTCAGATATCAAGTTTgatcttttttattaaaaatgtttctGAAGAATAAA

Function

GO: NA

KEGG:

id description
K25059 SDE2; replication stress response regulator SDE2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1091 lncRNA downstream 11457 2239863 ~ 2240595 (-) True G799
XR_005640326.1 lncRNA downstream 41221 2210411 ~ 2210831 (-) True LOC120566044
TU1058 lncRNA downstream 143874 2107819 ~ 2108178 (-) True G767
TU884 lncRNA downstream 223349 2011732 ~ 2028703 (-) True G656
TU860 lncRNA downstream 296061 1938778 ~ 1955991 (-) True G637
TU1127 lncRNA upstream 183513 2449866 ~ 2450775 (-) True G831
TU1154 lncRNA upstream 303637 2569990 ~ 2571186 (-) True G856
TU1162 lncRNA upstream 311759 2578112 ~ 2584242 (-) True G861
TU1215 lncRNA upstream 361980 2628333 ~ 2694373 (-) True LOC120566195
TU1220 lncRNA upstream 417840 2684193 ~ 2684601 (-) True G895
XM_039812236.1 mRNA downstream 116531 2128573 ~ 2135521 (-) True LOC120566031
XM_039812225.1 mRNA downstream 145551 2097369 ~ 2106501 (-) True LOC120566021
XM_039812876.1 mRNA downstream 502360 1745737 ~ 1749692 (-) True LOC120566421
XM_039803758.1 mRNA downstream 622893 1625530 ~ 1629159 (-) True LOC120560873
XM_039803728.1 mRNA downstream 675557 1470417 ~ 1576495 (-) True stab2
XM_039812353.1 mRNA upstream 5107 2271460 ~ 2302539 (-) False LOC120566094
XM_039812361.1 mRNA upstream 5108 2271461 ~ 2302586 (-) True LOC120566094
XM_039812374.1 mRNA upstream 37211 2303564 ~ 2345270 (-) True LOC120566106
XM_039812381.1 mRNA upstream 128282 2394635 ~ 2431448 (-) False LOC120566112
XM_039812388.1 mRNA upstream 128282 2394635 ~ 2418982 (-) True LOC120566112
TU905 other downstream 201668 2049069 ~ 2050384 (-) True G670
XR_005640399.1 other downstream 502360 1733546 ~ 1749692 (-) False LOC120566421
TU785 other downstream 770149 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 891579 1359664 ~ 1360473 (-) True G565
TU705 other downstream 1278528 966236 ~ 973524 (-) False G519
TU1327 other upstream 592143 2858496 ~ 2859302 (-) True G974
TU1366 other upstream 697387 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 708885 2975238 ~ 2978115 (-) True G1008
TU1552 other upstream 1142468 3408821 ~ 3410272 (-) True LOC120551303
unassigned_transcript_1 other upstream 1160597 3426950 ~ 3427022 (-) True trnak-uuu

Expression Profile