RNA id: XM_039812361.1


Basic Information

Item Value
RNA id XM_039812361.1
length 2399
RNA type mRNA
GC content 0.59
exon number 22
gene id LOC120566094
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2271460 ~ 2302586 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGCGGGGCTCGCTTCTGCAGCAGAGCCTCCACAACATCATCACTGCTCCCGGTACCACTACTGCACACagtactactactgctgctccTAGTACTGCATCCAGAACCGGAGCGGACCCAGTGTGAGCCCCGGAGCACCGACCCGCCCGCCGcTTCCTACGAGCCCATTGGACGAAGATACAGaatGTTTGCCGGCGTGTCCGGGCGGATCCAGAAGGACCGTCAGCGTGCCGAGGGTCTGGGCTCGGTGCAGCAGGCCGTACGCTACCAGAACCAGGACTACCAGGCCCTGAAGGACCAGTGTCTGCAGACCGGGTCCCTGTTCCAGGACCCGGCGTTCCCCGCAGAGCCCGCCTCTCTGGGCTTCAAGGAACTCGCTCCGTTCACCGCCAAGACCAGAGGCGTGGAGTGGAAAAGACCCACGGAGCTGACAGAGAACCCTGAATTCATTGTGGGCGGAGCCACGAGGACAGACATTTGTCAGGGAGCGCTGGGAGACTGCTGGCTGCTCGCTGCCATCGGTTCTCTGACTCTGAACGAACGTCTGCTGCATCGCGTCGTTCCTCACGGTCAGAACTTCGGCCACGATTACGCCGGCATCTTCCACTTCCAGttcTGGCAGTTTGGGGAGTGGGTGGACGTGGTGATTGACGACCGTCTGCCGGTTAAAGATGGAGAGTTGCTGTTCGTCCACTCGGCCGAGGGGAGGGAGTTCTGGAGCGCTCTGCTGGAGAAAGCCTACGCCAAGCTGAACGGCTCGTATGAGGCTCTGTCCGGCGGCAGCACCACGGAGGGTTTCGAGGACTTCACCGGCGGTGTGTCGGAGATGTACGAGCTGAAGAAAGCTCCCCGAGATCTTCATCGTATCATCAGCAAAGCTCTGGAGAGAGGATCGCTGCTGGGCTGCTCCATCGACATCACAAGCGCCCTGGACATGGAGGCGGTGACCTTTAAGAAGCTGGTGAAAGGCCACGCCTACTCTGTGACCGCACTCAGAGAGgtgGAGTACCGTGGCCGTCAGGAGCGTCTGATCCGGATCAGGAACCCGTGGGGTCAGGTGGAGTGGACCGGAGCCTGGAGTGACGACTCATCTGAGTGGAGCTCCGTTGATTCTGCAGAGAAAGACGAGCTGCTCTGCAAGATGGAGGACGGAGAGTTCTGgATGTCTTTCCAGGAGTTCCTGCGTCAGTTTTCCCGTCTGGAGATCTGTAATCTAACCCCCGATGCTCTGAGTAAGGACTCGCTCAGTTTCTGGACCACGACCATGTTCGAGGGCAGCTGGAGGAGAGGCAGCACGGCCGGGGGCTGCAGGAACCACGCCAACACCTTCTGGATCAACCCCCAGTATAAGATCTCTCTGCTGGAGGAGGACGATGACCCCGAGGACGACGAGGCGGCCTGCAGCTTCCTGGTGGCGCTGATGCAGAAGGACCGCCGCCGTTTCCGCCGCGGCGGCCAGGACACGCACACTATCGGCTTCGCCGTCTACCAGATTCCTGAGGAGctCCGTGGCTGTCCCAGCGTCCACATGAAGAAGGACTTCTTCCTGCGTAATGCGTCCTGTGCGCGCTCTGAGACCTTCATCAACCTGAGGGAGGTGAGCGCCAGGCTCCGCCTCCCTCCTGGAGATTACCTCCTCGTCCCCTCAACCTTCGAACCCGCCAAGGAGGCCGACTTCGTCCTGAGAGTCTTCACCGAGAAACAGGCGGACACACaTGAGATGGACGATGACGTGGAGGCTAACTTCGAAGAAGAGGAGGAAATCTCTGACAGTGACATCGACGATTCCTTCAGATCCATGTTCGCTCAGCTGTCTGGAGACGATATGGAGATCTCAGTGCGGGAGCTGCGGACCATCCTAAACCGAGTCGTGTCCAAACACCGAGACCTGCAGACGGATGGTTTCAGCATGGAGTCCTGCAGAGGCATGGTCGGACTCATGGACAAAGATGGCAGCGCTCGGCTCGGTCTGCTGGAGTTTCAGATTCTCTGGAACAAGATCCTGAAGTGGCTGGGCATCTTCCGAGAGTTTGATCTGGATAAATCTGGATGTATGAGTTCCTACGAGATGCGTCTGGCGCTGGAGAATGGCGggtTCAGACTGAACAACAAGCTGTATCAGACTCTGGTTGCTCGCTACGCCGACAACGACATCATCGACTTCGACAACTTCACCTGCTGCCTCGTCAAACTGGAGGCCATGTTCAGTAGGTTCATGCTGCGTTCAGGGCCCCGTGTTCAGTAGGTTCACGCTGCGTTCAGGGCCCCGTGTTCAGTAGGTTCATGTTGCGTTCAGGGCCCCATGTTCAGTAGGTTCATGCTGTGTCAGGGCCCCGTGTTCAGTAGGTTCACGCTGCGTTCTGGGTCACGTGTTCAGTAGAGCACTAGGTGACTTTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1102 lncRNA downstream 8301 2261027 ~ 2263160 (-) True G807
TU1104 lncRNA downstream 8904 2261720 ~ 2262557 (-) True G809
TU1103 lncRNA downstream 15884 2254816 ~ 2255577 (-) True G808
TU1091 lncRNA downstream 30866 2239863 ~ 2240595 (-) True G799
XR_005640326.1 lncRNA downstream 60630 2210411 ~ 2210831 (-) True LOC120566044
TU1127 lncRNA upstream 147280 2449866 ~ 2450775 (-) True G831
TU1154 lncRNA upstream 267404 2569990 ~ 2571186 (-) True G856
TU1162 lncRNA upstream 275526 2578112 ~ 2584242 (-) True G861
TU1215 lncRNA upstream 325747 2628333 ~ 2694373 (-) True LOC120566195
TU1220 lncRNA upstream 381607 2684193 ~ 2684601 (-) True G895
XM_039812327.1 mRNA downstream 5108 2252052 ~ 2266353 (-) True sde2
XM_039812236.1 mRNA downstream 135940 2128573 ~ 2135521 (-) True LOC120566031
XM_039812225.1 mRNA downstream 164960 2097369 ~ 2106501 (-) True LOC120566021
XM_039812876.1 mRNA downstream 521769 1745737 ~ 1749692 (-) True LOC120566421
XM_039803758.1 mRNA downstream 642302 1625530 ~ 1629159 (-) True LOC120560873
XM_039812374.1 mRNA upstream 978 2303564 ~ 2345270 (-) True LOC120566106
XM_039812381.1 mRNA upstream 92049 2394635 ~ 2431448 (-) False LOC120566112
XM_039812388.1 mRNA upstream 92049 2394635 ~ 2418982 (-) True LOC120566112
XM_039812407.1 mRNA upstream 157306 2459892 ~ 2489631 (-) False LOC120566128
XM_039812400.1 mRNA upstream 157306 2459892 ~ 2489631 (-) True LOC120566128
TU905 other downstream 221077 2049069 ~ 2050384 (-) True G670
XR_005640399.1 other downstream 521769 1733546 ~ 1749692 (-) False LOC120566421
TU785 other downstream 789558 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 910988 1359664 ~ 1360473 (-) True G565
TU705 other downstream 1297937 966236 ~ 973524 (-) False G519
TU1327 other upstream 555910 2858496 ~ 2859302 (-) True G974
TU1366 other upstream 661154 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 672652 2975238 ~ 2978115 (-) True G1008
TU1552 other upstream 1106235 3408821 ~ 3410272 (-) True LOC120551303
unassigned_transcript_1 other upstream 1124364 3426950 ~ 3427022 (-) True trnak-uuu

Expression Profile