RNA id: XM_039812388.1


Basic Information

Item Value
RNA id XM_039812388.1
length 2669
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120566112
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2394635 ~ 2431448 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggttgtctgacggtgccggttgggggtgtgatgaacagtagcaattatagtcacaataataCTCCAAATATCAGTGGTGAAGTTTATGGGCTACAGGCTGCTGATGTGTTTTTTCACAAAGCAGTTTTGGAAACACGGTTTCTGTGATGTGGTGACGGCTGGGAATCTCTCGGCTCCAGTACACTGAGAAGATGTGGAAACCCAGTATTATTAATGACTGACAATGGCTGGTCGTCAAGTGCAATCATGCATTGGGCAAGAGCATAGTTAATTTTTTACAGCCAAAAATCTCCAAACTGCTGGCATTGCTCCTCTTCTTTTGCCTATATCTGCTTGACAGAGAAGTTATTGTCATATTGCTATGAGGTGGTATCGGGTGTGGTAGTATCTAATCTAATTTTATGACTACAAGTACGAATACATGCGCACAGCATCGGATACCCGATGCTGGCATCTGtgtcggtgcatccctagtctaAACTGGACTCAGGGTTTGATTATACCAATAATTTGTTCCTCCAGTGAACTATGGCACAGTTTGTTGAAGACTGTAGCCTGAGGGACTGGAAGGAGGTTGGCTCTGGGGGTTTTGGACAAATCTACAAAGCCAGGCATCATCAGTGGGGTTTTGATGTGGCCATTAAACTGCTTCTTCAGGGCGAGGGGACCGAGAAGTCTTTGCTGCGTGAGATCAAGATGATGCGTCAAGTCACCAGCCCGCATGTTATGGCCGTCCAAGGGATCTTCAAGGGTCGAACGCCCTCCTCTGGCAGGTCAAAACAACTTGGTCTGGTCATGGAGCTCATGGAGAGAGGCTCATTGGCCTCCCTACAGGAAGCATTGAGGGGAACTCCACCCTGGCCTCTGGTCTTCAGACTTGCTCACCAAGTGGCTCTGGGTATAAACTACCTCCACAGTCTGCCCCGTCCCGTTCTCCACCAGGACCTGAAGCCCCAAAACGTGCTGCTGGACGACGCTCTAAATGCCAAGCTTACAGATTTTGGCCTTGCCCGGATTTCCTGCAGCGTCACACAGGTTTCCAAGGACGATGAACCACTAGGAGGGACGATACATTATATGCCACCAGAGGCTTTAAAAAGCACATCGTACAAACCTACCAGAGCCTTTGATATCTACAGtTATGGGATACTCCTTTGGTCCATTGTCACAGGGAAACAACCTTATGAATATGCAAAGCCTGACGTAGTGATGTTGCGCATCCCGAAGGGAGACCGCCCACAGCTGGATGATATCAAGGGCAATGTTGCCGGGTTGACAGAGTTGAAAAGATTGATGAAGAGATGCTGGGATCATAAACCTGAACAAAGGCCCAGAGCCCTTGAGTGTACAACTGAGACAGAAAAACTGTTCAAGATGCACAAACATGCAATCAATAATGCTGTCTATGAAGTTCTGATGAAACTGgACCAAAAGAAAGAAGACGGCATGGCAGCAGGAGCTCAAGTTCAGAGGGATCAAATCGCTGAGGCTTCAGTGGAGGGGACCCAACAGCTCCTGAGAGAATTGAATCTGCTTGCTGTTCCACAACAGAGAGTGGACCCTCTCAGGGTGCAGAGGCGTGATCTGATGAAATattcctgtgaactcacactggacacaaacacagtgaacagagaACTCAAACTGTCTAACAACAACAGGACGGTGACACGGGTGGAGGAgtatcagccatatcctgatcatccagagaggtttgactggccccagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagaggagaggaggaagggttTCTATagcagtgagttacagaggaattagcaggagaggaaacagtgttgactattggtttGGAcgtaatgatcagtcctggagacTCTGGTGCTCTGATGATGGTTACTCTGTCTGGCACAATAACAACAGAACCTCcctcccttgctcttcctcctctgttTCTAGAAGAGTAggagtgtatgtggactgtcctgctggctctctgtccttctacacagtgTCCTCTGGAtcactgatccacctctacaccttcaacaccacattcactctgCCTCTTTATCCTGGGTTTGCATTTGGGTCATATGGTGCCTCAATAtctctgggctagatttatcaagccgtttgcgcctgtttccaggcgttAAATGTTCTCAAAGACTGACTTAACcaatgcgggctatttacaaacagggcacacttgggtaaaatcgcagatgcctgccacatgagcgagaagagacaagttgcgctttcaatatgcgtttgTGGGAGGGtcatggggaaagtgggagttccacccaaaaggtgggaAGATACGCGTGAAGTGCGCCTAATAACATATTGGTGAAGGACGACATTTCACTTTGGTTCACATTTGTCTCACTGATTGTGTCTTTAATGTCAGAAatgttcttcttctttagtaATGCTGAAATGATCTCCTCAGAGATGAGAACTAGTTGTGTATAAACTGTATTGACTTTGATTTTCACTTTAATCATGTTTTATTGGAGCAGCTTCAGCTGTTAGTGATTTATTTccaaaaaggtttaaaaaaggtttaataaaacagacTCGATGAGTTCAACATGTTTTAACAAATGTAAATCTGTTTCAATTTgaaattcaaaaaataaagatgtttCCTTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1102 lncRNA downstream 131475 2261027 ~ 2263160 (-) True G807
TU1104 lncRNA downstream 132078 2261720 ~ 2262557 (-) True G809
TU1103 lncRNA downstream 139058 2254816 ~ 2255577 (-) True G808
TU1091 lncRNA downstream 154040 2239863 ~ 2240595 (-) True G799
XR_005640326.1 lncRNA downstream 183804 2210411 ~ 2210831 (-) True LOC120566044
TU1127 lncRNA upstream 30884 2449866 ~ 2450775 (-) True G831
TU1154 lncRNA upstream 151008 2569990 ~ 2571186 (-) True G856
TU1162 lncRNA upstream 159130 2578112 ~ 2584242 (-) True G861
TU1215 lncRNA upstream 209351 2628333 ~ 2694373 (-) True LOC120566195
TU1220 lncRNA upstream 265211 2684193 ~ 2684601 (-) True G895
XM_039812374.1 mRNA downstream 49365 2303564 ~ 2345270 (-) True LOC120566106
XM_039812361.1 mRNA downstream 92049 2271461 ~ 2302586 (-) True LOC120566094
XM_039812353.1 mRNA downstream 92096 2271460 ~ 2302539 (-) False LOC120566094
XM_039812327.1 mRNA downstream 128282 2252052 ~ 2266353 (-) True sde2
XM_039812236.1 mRNA downstream 259114 2128573 ~ 2135521 (-) True LOC120566031
XM_039812407.1 mRNA upstream 40910 2459892 ~ 2489631 (-) False LOC120566128
XM_039812400.1 mRNA upstream 40910 2459892 ~ 2489631 (-) True LOC120566128
XM_039812416.1 mRNA upstream 40910 2459892 ~ 2489618 (-) False LOC120566128
XM_039804709.1 mRNA upstream 124911 2543893 ~ 2549849 (-) True LOC120561571
XM_039804731.1 mRNA upstream 174553 2593535 ~ 2625954 (-) True aars2
TU905 other downstream 344251 2049069 ~ 2050384 (-) True G670
XR_005640399.1 other downstream 644943 1733546 ~ 1749692 (-) False LOC120566421
TU785 other downstream 912732 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 1034162 1359664 ~ 1360473 (-) True G565
TU705 other downstream 1421111 966236 ~ 973524 (-) False G519
TU1327 other upstream 439514 2858496 ~ 2859302 (-) True G974
TU1366 other upstream 544758 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 556256 2975238 ~ 2978115 (-) True G1008
TU1552 other upstream 989839 3408821 ~ 3410272 (-) True LOC120551303
unassigned_transcript_1 other upstream 1007968 3426950 ~ 3427022 (-) True trnak-uuu

Expression Profile