RNA id: XM_039812469.1


Basic Information

Item Value
RNA id XM_039812469.1
length 8586
RNA type mRNA
GC content 0.50
exon number 27
gene id LOC120566152
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 36022178 ~ 36041403 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTGCGACAGCTGTGCGTGCTTTCTGGCAAAAGTAGGTTACAAAAAGGTGCGGGTGTTTGGAGACAGATCGGAGGAACAACAGTCCTTTGAGGACGATGTGAAAGACGATTTTCTCAGGAAAgcatgagagagaagagagatgaAGTATGATGAAAGTCCTCTCCGGGTTATATAATGGAAGGACTGGAAAAGGAGAGAGCCATATGCAGCTCTAGACCCTTCCCATGGCTTAGTCACCCCAAAACAGAGGCCTCAACCCTGCTATGGAAACTTAAAGACTGCTTCCCCACCAATGAGACAACCTCCGCTCATCACACAGATAAAAACAATTACATGGACAGCAGAAAGGCCGTGTTGGAACTGAAAGatgtccctcctcctccactccataCTTCCTCTTCCCAATCATCCCAGCCCTTCTCTCTGGCTACTCTCCCTATGCCTCCTCCCTGCTTGCCTCCTCCTCAGCTTACACATGACTCCCACCAACAaccgccaccaccaccacagcaGCAACAAGAGGGGACTAGCCCCAAAGTAAGCATTTACACACACTGTGACTATTGCAGCACAGATGGCTACGGGTTATTGGGTAGTGGAGGTGTTGttggtagcagtagcagcatcGCTGGTGTTGTCTCACTCTATATGGCCCCAGGCTCTCTGGGAACacccatcagcagcagcagtattaGTAGGTCGGGCCCTTGCTCTGTAGCCTGCTCTGTAGCCTCATCATCTGTTCATCAGTATAAACATCACATGAGCTGTGGAAGTGGAGGTGACGTTCTTGGTCCTTTGCCCACTATTGGTAGCAAACCCCAGCTGCCCTCTTCTGTTGCTACCTCTCAGCCTGTTTCATCACACCCCTAcctctcctgctgctcagggctTCTCCACACCTACCCAGCTGTACCTCTTCCATACAGTCAACCCAGCCTGTTTCCCTCCTCAGCACCTCTGGCTTCCTCTCTCCCCTGTGTTTCCTCTTTACCCGCTCCCTTGCATGGCTCTTGCCTGGCCCCTTCTGGCTTCTACACCTGTGGTGTGGACTGCTGCCCATCAGCCAGAAGATCCCAGAGAAGCACACTTGGTGATCACCCAACCACCACCACTATCACCACTACAACCACCTCAGCACAATTCTGCTCTAATCCTTTGCACCTAAATGTAGAACGCACGGTTTGTGTGAAGGGAGCACACTACTGCCAGGATTGCCTGTTGAAGCCCATGAATGGTCTGGCGTCAGAGTCGGACAAGGTGTGGCCCAATGTTCCTATTCCCCAGACTGCTCCTATCCCTATCCCAATTTGCAATGGCTGTGGCACCTCCTCGGATGGCATGATGCTCATGCCATCGGCCAGCCTTGGCAAGACCGGCCAGAAGTATGGTTCCCCAGAGAATGGTGGTTCTGAGAACATTCCTCCGGTGGGTGTCTTCTGGGACATTGAGAACTGCAGTGTGCCCAGCGGTCGCTCTGCTGGAGCTGTGGTCCAGCGTATTCGCAGccatttctttcagggccaccGTGAGGCAGAGTTCATTTGCGTCTGTGATATCAGCAAAGAGAGTAAAGCTGTCATCCAAGAGCTCAACAACTGCCAGGTTACTGTTGCACATATCAACGCCACAGCCAAGAATGCTGCAGATGACAAGCTTCGCCAGAGCCTACGACGCTTTGCTGAGACCCACACTGCACCTGCGACTGTTGTATTAGTATCCTCGGATGtgaactttgcaagtgagctgAGTGACCTGCGCCATCGCCATGGCTTCCAGGTAATCCTGGTCCATGGCAGCCATACATCTTCAGCCCTGCTGCAGCACGCCCACCGCCATGTGGCCTTCCAGGAGATCACAGCTGATCTGCCACCACGTATGCTTGTCAAAGCACAGCCCAGTTTCAACCTCCTCTATGTGCACAACCTCCCTGTCAACTGTGACAAGAGCCTGCGGAACGCTGTGAAGCTCAGGCTGCGCCGCCTGTCAGACAACTGTGGTGGCAAGGTGCTGGGCATGGCCCAGGGCACAGCAGTCCTCCGTTTTGGCAGCACTGAGGCAGCTGCGCGTGCCCGCAAGCGAATGGAGAATGAGGATGTGTTTGGCCACCAAATCAGCCTTTCCTTCTCCCCACGGCCCCGAGACGATGCAAGTCCTGAGCTTGAGCTTCAGTCTCGGTCCCATCACTTGCCTCAGACTCTGCCCCACACGTATCAAAGCCAGGATTCAATGTTCGGCTCTCCCCCATCCATATCCTCTTCCTTTCTGCACCTGGAGAAGCCCAGGTCACCCAGGAGGCAACGGCGAGCAACCCGCCCGTGCCAGGCCCCTGGCCCAGTGCCCGAAAGGCCCTACAGCCCCAGGAGAGGGTGCAGTGGGCCTCCCGGTGGTGCTCCAGCCAAGCCCCATCAGGAGCTGGGTAGTTTGGAGGGCAAGACCAGAATGGGCTTCCACCACCTGGAGAAAGGACGTGCCGCTTCCTCTTCCCCTCACCGTAATGGTGAGACAGGAGCCCTGGAGCAGCTGTCCAAGTCTGGCCTTAGTGGAGAATCTATGTACAGAAGGAGACGAGATGGCTCCTACCCTCGCAGTGTGACTGAATCCCCTGTAGAACAAGGGGACAAGAGCTCAGGGGAGTTCCAGATTAGCATTCCCTCAGCTTTCAGCAAGTTGAACCTGCACAGGAGCTTCAGTCCCCTCATCCTGTCCCAGGGCTCCTGGTCATCCAGGAGTGTGTCGCCCTGCCTGTCCAGCCGGTCCTCACCCCTCCTGGCTGCCCCTCGTAGCATGTGTCCGGAAGGTCCTCCTGAGCCTTTCTCAGATGGGGCAGAGGTCCAAGTGGCCAACCTGGACTATAGAATGTCCCGCAAGGATCTGCAGCAGACACTGCATGACACCTTCTCCCGTTATGGGCGGGTGAAAGCTGTGGAGCTTAGTCCCCACACTGACTATCAGTTGAAGGCCACAATCCAGATGTTTTCCCTGCAGCAGGCCATAAGTGCTGTCAGTGGCCTGCACCGTTATAAGATCGGAGGCAAGCGCATTCAGGTGTCTCTGATCACTGGTGGTAGCAGCAAATCCCTTGTCATGCTCAGCACAGAGATCATCAGCATTCTTCAGGATGCGCCTGCAAATTGCCTTCCCCTCTTCAAGTTTACGGAGATCTATGAGAAGAAatATTCGCGTAAGCTTGTGGTTGGGGATCTGTACAGGCTACCAGAGGTGGTGGCAGTGCGGGAACAGGGAGGCTCAAGACTTGTGTGCCTACTGTCCAGCAGCCAAATACGTCAGAGTCCACTGGGATCTTCCCAGTCCCAGGAGGGCTCCTCCTCTGCTAGCGGCAGCCCCGTAGTGTTTGAGGAGCTGGAGTACCATGAACCTGTCTGCAGAGAGCACTACACACAGCAGGACTTCAGTGAGGCTGACTTTGACCCTGACTCCTATACAATACCTTTTGTTGTGATGTCTCTGAGCACCTTAGCATCTGAGGTCCACAGTCTGTTGCAGTCACATGAGGGGACTCTTCCATTACTCAGTTTTCCAGACTGCTATGCAGCGAAATTCAGCCCCCTGCAGCTGGGCAACGAGACACTGGAGGGTGGCATTCCTCTGGAGCATCTCATTACATGTGTTCCCAGTATCACAATAGTCACAGCTCAGAACGGCTTCAAAGTCATCAAGTGGATCCACAACAAACCACCAGCACCAAACTCTGAAACGTGGATTCAGCGCTGCAAGAGTCCAGTTGGCAACCCACAGCTCATCCAATTCAGCCGAGAGATTATTGACCTGTTGAAGAGTCAGCCTTCTTGCATTATGCCGATGAACAAGTTCATACCATCATACCACCATCACTTTGCCAAGCAGTGCCGTGTCTCTGACTATGGCTACTCCAAGCTGCTGGAGCTTCTGGAGGCTGTGCCACATGTCCTGCAGATCTTGGGTATGGGTACCAAGCGTTTACTGACCCTGACTCATCGTGCTCAAGTGAAGCGCTTCACCCAAGACCTGCTCAAACTGCTTAAATTTCAAGCCAGCAAACAAGTGGCAATCAAGGACTTCATGCAGGCGTACCATTGGTGCTTCTCCAGAGACTGGAGGGTAATCGATTATGGCATATGTGACTTGATGGACCTGCTGATAGAGATCCCCGACACCACCATCACTATTACACATCAGGACACGGACACCGTCATCTCAGTTCCCAAGAGagAGCGTACTGTAGAGGAAATAGAGCGCACTAGGCAGTTTGGGAAGGAGGTGGTGGACCTTCTTCGTCACCAGCCTCACTGCCGAATGGCCTTCAGCAAGTTCATACCCACCTACCACCATCACTTCGGTCGTCAGTGCAAACTCAGCTACTACGGCTTCACCAAGCTCATGGAGCTCTTCGAGGCAATCCCCAACATACTGATGGTGTTGGAGTGTGGTGAGGAGAAAGTGCTGACTCTGACAGAAGTGGAGCGTATCAAGGCGTTGGCCGCTCAGCTGGTCAAGCTGCTTCGGGCTCAGAAAAACTCCAGTCTCCCTGTCTGCCAGCTGCTCACGGAGTACAGCAAGACCTTTGGTTATGGTCTACGCCTGCAGGGCTATGATGCCAGCTCCCTGCCGGCTCTGCTTGCCAAACTCTGCCATGTTGTCAAGGTGGTGGATGGCTCGGGGGGTCGGGAAGTGCAGTTGATCAATAGGAAGTCTTTGCGCTCACTGACCTCCCAGCTACTGGCTCTGCTCATGTCCCAAGAGGAGGAGCACGTCACCAGGGGTTTCAAAGTGGATGAGCTGAGCCAGCATTACCTGACTGTCCATGGAGCCCCTCTCAACCCATGTGAATATGGGTTCCTGTCCCTCAGCGAGTTACTCAAGAGCCTGCCCTACCTTGTGGAGTTGTACAGTGAAGAAAGCGATGACAACAACAAAGCTGGCAACACTGCCAGTGGTGTTGATGAGGAGTGGGTGAGGCTGACCAGGCTCTACCAGTTTGCCCGTAACGTACGCGGCCTGCTCCACACCTACCATTACAACCAGATCTTCCTGACGGAGTTCCAGGGGGCTTATAACAAATTTACAGGCTGCAGCCTTGAACCACGCTCCTACGGATACACCAGCACTGATGAGCTGCTCAGCGCCATTCCACAGGTGGTCTGGATCAAAGGGCATGGTCACAAGAGGATTATCGTTTTGAAGAACGATATGAAAGGTGAAGcAAGGGCAAGCCCTTCAATCCCCAACAGCCCCCAGCCAGAAGAGAACACGGCGAGCCCGAGAGACAGCCCGATTAGCAACGCAACATCTGGAACCCAGAGTCCAGGTGGCGATTCAGCGGTAGAATCGGAGCTGCTGTGTCTGACCTCAGCAGTAGACCTACTGTGTGGTCCTGTACCATCCTGCCTACCGTCACCTCAGCTCCACCCTGTTCCCCTCCAGGAGACGGACCTGATTCACTTTGAGGAGAAAATTCCAACAGTGAGTGACGAACCTGATGCTGCAGCGGTCGCTGACAGCACACCTGGGCTGCCTGGCAGCACAGACGACTCTGCAGTCCCCAAACCTCCGCCCCCCTCTGACATGAAGACCCCTTTGTCCATGGACAGTCCCAGCAGAAGAGCCACTCGCAGCAGAATTAAGCTAGCTGCCAACTTCTCATTCACAGCAGGTCTCTgatccctttctctctctctctctctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaatactAGTTCACACATAGTGTAACTCTAAATACAAGAGTTTTAGCGGCTACACTGAACACACTACACAGAAGTGACCCTTGCTTTTCTTCTTGATCAGTCATCGGCCATCTTTGTTTGCTTATTTCACAATCGGTGTGTTCTTTCCGATGACGTTCACCAAGCTGTGATTTTTCTTCTTGCAGATTTTCTGCAgttctttgaattgaattgccaAATTCATCTACTGTAACGTGTGTTTGATTTCATCTCCATAGAAGTTAAATTATATTTCTGCATCTTCAGGTCAGAGCCACGTTGTGTCAAAGAACACTCGCTGGCTTACAATGAATGCAGCGTCTAAAGATGAGTTAGTTGTCACTGTATACATGTATCTGGTAATGGGAGAAATGCTGGGGATGAGTAACTAAGTTTTGTGTGTTAAATCCAAGAAATGTAGTTACCCACATTCTCAGATTATACAACTGCCAAATAACAGATTTATAGAGATGTTTTGTTATTGTACAATATTGAGAAACCTACACGTATACGTCCTTGCTGTATCCCTGAAAACAGAGCATTTAATTTTATTACATTCAATAATTTTTACGCTCCTTTTCAAATTTTGGGAGAATTTGCTTTGTAGGTAACCATAGACCTGTCAACCAAACTGGCCGCTAAGCACCACACGGTTTCGTTCTTTCAGTCTTCTCATGGGTAAAGTACTAAGGAATTCTAAAGAGGTAGCTTCTCTTTTAGGTATATTCTTGTCTTTTGTCTCTGTTTAGTAACCCTCAGGACAGTATTTTCAGTTCCTTTTTATATTATGCAGAGTATGTGGTAGTCCGTGAAAGAGTTTGGCCTAAATGTGTGGTGTATTTGATGGCAATTTAATGGTGGGACTTAACATTAGTGTTAACTTTTCATATCGTGGCTTTGTTAACGGAAGCCAACGGTCTTTGAACAGTTAAAGCATCGATGGCAAACTTTTGATTGCTATTGCGACAAGCACTGCTCTCAggaatttttttattcttgttgTACTTTGACTTAATTTATTGCAAAGATTTCGGCTCGTCTCTCCAGGGCCACGAATGAAGGCCTGGAAGGGGGTGGCTCTTTAACACTCTTGCCAGATGTGCGCTCCGGCAGCAGGAACGAAGATGTATACCGTACTTTAATTGTTCGGCTTTCACCAGCAGCCGGTGTGTTGTGTTCTTTTTAgctgtgttttgtctgtgtggttTACACCGGAGTAGGTGGTGTGAAATATGCATGGTGTGCATAAATGAGTTTATGCATGGTGTAAGCCCAGGAGGAACAGACAGGAACAGACATTCTTGAAGATCGGTCTTTTATTTCCACCATGTTTTAGGGGTCTTAGAGTTGGCGTCACCCTTGCAGTTGCCACATTAAATGCTCAGGGTTTTTAGAGTTAACCTTGTTGCTCGTAAGCACCGTGTCTGTAGTGATGTCCACTGCCTGAGTTTGAAGAGTTGGAGGGGAGCAGTAAGCACTCCTGAGTTTTTGATTTTTAATGACAAGGtgattggttgtgagtttttaGGGGAAAGAGATGTGTCGGgggaaggggtgggggggggggcggggggtggTAGGCTGTTTGTGGAGCACCATGGGGGCTCTGGGCAGCCTCCTGCACAGACTGTGACGTACACACAGAGGACCCTCTGCGGCTCTCTGGAATCTGCCGGGCTTTTACAATGGCTTGTATTTGCCACGGTGCCAAAAGGAATCGCCATGGTATCTCCCCATCCCTCCCATCTCACATAGAGGAGTTTTTACTTACTGATGTGTGTTGGTTTCTCCGTTTTCCCTCTGTCTCAAGTGTTTACAAGATTGCTGGCTGCTGAATTGCCATCAAATAATGTCGGCTGCTGGGAAGTTTAGCACGACCGAGGCGCTGCTGAAGTCTAAGGGTTGTTGTGGTTTGTGTTCAGGGAAAAGGTTCAAAGAATGGGTAAAAGCCCATTTAATCCGTTTCTGTCCCGTTTCAGTGTTTACCTCTTTAGCCAGTGttgataaatttttttttttgttctttgtcaGACTTGGTTTTGACTTGGTACGAGAGATTCCACCTGCCAACTCTCCAAAATCTGTCTGCATGCCAATCCGAATGTTTTTAATTAGGGCTGTTAGGGTTCAGGTCTCTCCTGCAATGTTTTACTGACTATCTGGACACCTCTTTGATTAAGGAATGAGCACCTCAAAATAGTTAATTATTTAGAATtggtaatgtttaaaaaaaaaaaaaatgggctaAAAAAAATGCTCAGATGAAATGTCTAGATTTAACTTTGGCAGTACGGATGGAtaactttttgtgactttgagCAAAACCTAGCTCTCCCCTCAGAGTACTGCAGTGGCAACTAACTAACTCGTGAATATATTTTACtctatatttctctctctgttttggtTACATCAGTGAGAAGCTATTGTACCGGTCAAAATATGCACTTTTGCATAGTTTTGGTTCATGAAATAATGTGAAATTCGGTAGTGAACTGGGAGGGGCTGAaacgtgtttttgtgtctacCTCTTTCTGTTTAACTGTATGTGACCTCATCTTGCTTATTCAGTTTCATGTTGCACAACTGTTCTACGGTTAAAGAAAAGGTTTAATTAACTCAATAGTGTCCTTTTTAATTAaactgtgatttattttttgtttacaactTTGTCACTTATGtgttcaccccccccccctctgtcaCACCGTTTTACTGCATCACCACACCAGAAGTTGCTGTAACAGTTTAACGTTGTTGAAgggaccaaaaaaaaagatttctgtTATTAAATTTCACAAGCATCAA

Function

GO: NA

KEGG:

id description
K17573 LKAP, MARF1; meiosis arrest female protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13754 lncRNA downstream 90323 35931599 ~ 35931855 (-) True G10202
TU13752 lncRNA downstream 92918 35928749 ~ 35929260 (-) True G10200
TU13750 lncRNA downstream 101102 35920855 ~ 35921076 (-) True G10198
TU13721 lncRNA downstream 179041 35799621 ~ 35843137 (-) True G10174
TU13682 lncRNA downstream 319586 35698632 ~ 35702592 (-) True G10143
TU13960 lncRNA upstream 120613 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA upstream 120613 36162016 ~ 36166879 (-) True G10349
TU13978 lncRNA upstream 192902 36234305 ~ 36234691 (-) False slc5a10
TU13988 lncRNA upstream 235454 36276857 ~ 36280693 (-) False LOC120547992
XR_005637139.1 lncRNA upstream 240163 36281566 ~ 36284261 (-) True LOC120548049
XM_039813314.1 mRNA downstream 29090 35984246 ~ 35993088 (-) True LOC120566690
XM_039812943.1 mRNA downstream 52912 35945130 ~ 35969266 (-) False micall1a
XM_039812818.1 mRNA downstream 52912 35945130 ~ 35969266 (-) True micall1a
XM_039807596.1 mRNA downstream 173717 35844287 ~ 35848461 (-) True klf1
XM_039807489.1 mRNA downstream 190889 35828755 ~ 35831289 (-) False LOC120563277
XM_039814273.1 mRNA upstream 13511 36054914 ~ 36084518 (-) False myh11a
XM_039814189.1 mRNA upstream 13511 36054914 ~ 36084518 (-) True myh11a
XM_039814337.1 mRNA upstream 14395 36055798 ~ 36084518 (-) False myh11a
XM_039816627.1 mRNA upstream 46793 36088196 ~ 36091347 (-) True cep20
XM_039815196.1 mRNA upstream 50530 36091933 ~ 36117858 (-) True abcc6a
XR_005640401.1 other downstream 52912 35944048 ~ 35969266 (-) False micall1a
TU13574 other downstream 435596 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 544818 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 621704 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1564543 34452850 ~ 34457635 (-) True G9740
XR_005640904.1 other upstream 169725 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 171143 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 193380 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 240604 36282007 ~ 36282095 (-) True LOC120569597
XR_005640908.1 other upstream 240902 36282305 ~ 36282393 (-) True LOC120569600

Expression Profile