RNA id: XM_039812746.1


Basic Information

Item Value
RNA id XM_039812746.1
length 1758
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120566319
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 622380 ~ 1125737 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCTCCCtccgtgcacacagcgtctgtctccatcaaaACGAAAGAAAGACAGCTGGCAAAATTCCCAAGTTCACGTAAGATATGGCTGCTGTGAGCATTCTGCAATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTCAGCACACCATGTGGACACAACTTCTGCAAGAACTGCATCACTGAACACTGGAATACTAGTGACCGGCAACTGTGTCCGATGTGTAAAAAGGTTTTCAACACAAGACCTGAGCTGCACGTCAACACTTTCATCTCTGAGATGGTCGTTCAATTCAGACAGTCAGCTCAacagaaagccagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacatctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgacagcttcacgtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGACCACAAGACGCATGATGTATTTCCTCTGAAAGAAGGATATGAAGGAAAGAAGGCAGAGCTGGGGAAGACAGAGGCTGAAATTCagcagatgatccagaagagacgaCTGAAGATTCAGGAGGTCAAACACTCGGTCGAcctcagtgaggaagatgcagacagagagatagcagaaggtgttcaggtcttcacttctctgatggagtctgttgagagaggcctgaatgagctcattaacacgatcaaagagaagcagaaaacaacagaaaaaaaagccaaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagagaagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAACAACCTCCACCCACCAAGGACTGGACAGAGGTCAGCGTCCGTCCATCATCATATGAGGGGACTGTGTTGAAAGCTGTGGTtcagctggaggagacactcagtaaagagatgaagaagctgcttgaAGCCGAGCTGAAGAGGGTccagcagtatgcagtggatgtgactcttgatcctgatacagcacatcctaatctcatcctgtctgatgatGGGAAACAAGTGAATCTTGGTGATGGGAGGAAGAATCTCCCAGACAACCCGGAGAGATTTTCTTATCGTGTTTGTGTTTTAGGAAAACAGAGTTTCTCTTCAGGCAGACTATACTTTGAGGTTCAAGTTAAAGGAAAGACTGACTGGACTTTAGGAGTGGCAAGAGAGTCGATCAAGAGGAAGGGAAGCATCACACTGAATCATCAGAAAGGTTTCTGGACTATAGCGTTGAGAGATGGAAATGAGTACAAAGCTACTGCTGACCCTTCAGTCCATCTCTCTCTGAAGTCTCGGcctcagaaggtgggggtgtttgtggattatgaggaCAGTCTGGTCTCTTTTTATGACGTagatgctgcagctcttatctactcctttactggctgctccttcactgagaaactcttcccATTCTTCCATACTGGTAATAATTATGGTGGTAAAAACTCTGCCCCTCTGATCATTTCTCCTGTCAGTTTAAACTAATCACTGATCTTATTTCaagtattgatttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320 lncRNA upstream 131809 522532 ~ 522989 (+) True G221
TU106 lncRNA upstream 244336 409741 ~ 410462 (+) True G55
TU100 lncRNA upstream 268150 370651 ~ 386648 (+) True G50
TU99 lncRNA upstream 285501 369028 ~ 369297 (+) True G49
TU98 lncRNA upstream 308891 345628 ~ 345907 (+) True G48
TU362 lncRNA downstream 27674 686445 ~ 692229 (+) True G261
TU299 lncRNA downstream 49382 708153 ~ 753720 (+) False LOC120566394
TU372 lncRNA downstream 149790 808561 ~ 811947 (+) True G270
TU290 lncRNA downstream 226336 885107 ~ 1195250 (+) True G195
XR_005640492.1 lncRNA downstream 232850 891621 ~ 892123 (+) True LOC120566926
XM_039813197.1 mRNA upstream 15791 622385 ~ 639007 (+) False LOC120566631
XM_039813187.1 mRNA upstream 15791 632717 ~ 639007 (+) True LOC120566631
XM_039813164.1 mRNA upstream 28333 622451 ~ 626465 (+) True LOC120566616
XM_039812793.1 mRNA upstream 35699 614215 ~ 619099 (+) True LOC120566389
XM_039812964.1 mRNA upstream 98955 514414 ~ 555843 (+) False LOC120566458
XM_039813209.1 mRNA downstream 5557 664328 ~ 669168 (+) True LOC120566643
XM_039813442.1 mRNA downstream 20051 678822 ~ 680811 (+) True LOC120566792
XM_039812904.1 mRNA downstream 32569 691340 ~ 696115 (+) True LOC120566437
XM_039812722.1 mRNA downstream 42899 701670 ~ 707991 (+) False LOC120566319
XM_039813219.1 mRNA downstream 54215 712986 ~ 717671 (+) True LOC120566650
TU271 other upstream 56591 583390 ~ 598207 (+) True G176
TU279 other upstream 172908 477971 ~ 481890 (+) True G184
TU56 other upstream 440248 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 477736 175133 ~ 177062 (+) False LOC120560058
TU28 other upstream 581892 72084 ~ 72906 (+) False G11
TU268 other downstream 343655 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 358136 1016907 ~ 1019038 (+) True G199
TU395 other downstream 457853 1116624 ~ 1144413 (+) True G292
TU260 other downstream 485883 1144654 ~ 1158559 (+) True G165
TU241 other downstream 534890 1193661 ~ 1219085 (+) True G151

Expression Profile