RNA id: XR_005640401.1


Basic Information

Item Value
RNA id XR_005640401.1
length 4191
RNA type transcript
GC content 0.54
exon number 17
gene id micall1a
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 35944048 ~ 35969266 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGGCGGCCAACGCTTCAGTCAATGCAACTCGAATGGATTGGCACCGGCGCCGGGGCTGCTTTGATCAACATTAATTGTCCGGGATGTATTTTGTTGTTGCATAGAGTTTCAGCATGCTGTAGCGCGCAGTGTAACAGACTTTCTATCCAGCGTTTTAACAGCCGTTGCGGTGACTGCACCAACAAACAAAACCCGTGTTGTGGTTCACCTAAAGGAGGAAACCGTCACCTATGCTTCGACTGAAACTGCATCATCGCCCCAACTGACAAGGACACTCCTCATCACAGTGCCAGCGCCCACAAGAAGAGGCTAACCAGCATAACGTTACTGTAGACCCAGACCTGAGCTAGCAGCAGACTTAATGTGccttagctagctagttagctagctgagtTCGCTAGCTACGTCAAGAACTTTGTTGGCAATCTACCAACTCTGGATATCAGCTGTGTTTTTTACCCAGTGGTTCTGGTCAAAGTACCACTTTAGATGTAGCTAGTTATCGCCGTCTGACTAACTCGTTACAGGACATAAAGTGGGGGACACAATGCGTGTTGTAGTTGCAAAAGTTAGGTaacatctagctagctagcttgcaaGCCATGCTAGTTTTTCTTAACGTGACTGGCTGGCTGTTGTGAATGAATGTATCGTAGGCAGCAGCATCGGGTGTTGTCTGGCTGTCGCGCCTTCACTGAAACGCTGCTGATGACTCGTTTATGATCATACAAAAACACTTTGTGTTGTCTCCTGACACGCCTGGGACAAAGAAACTCGGATTTTATTTGACAAGAATACCTGGATCTGTGTGAGAATAGTATCATGGGATCTCTGAAGGCTCTGCAGGAGTGGTGTCGTATACAGTGTGACAATTACAACGATGTGGAAGTAAAGGACATGTCAACGTCCTTTCGGGACGGTTTGGCGTTTTGTGCCATAATTCATCGTTACAGACCAGAATTGATAAACTTTGACGCGCTGTCTAAAGAGAATGTCTATGAGAACAACCGACTGGCGTTTGAAGTGGCAGAGACAGAGCTGGGGATTCCCGCCCTGTTGGACCCAGAAGACATGGTGTCCATGAAAGTGCCTGACCGGCTCAGCATCATCACATACGTTTCCCAGTACTACAACTTCTTCAACAACAAGTCTCAAGCAAACCCCCCTTGCATGAAAAGGCTGAGTTCTGTCGGTCTGAATGAGCCAGCCCAGAAAAGACCCCCGACCCCTTTGGAAGACAAACTGGAGGAGTCTGAGCCGAGCCGGCCCGCGCCGACCGGTGTAGAAGCGGTTGCAGAAGTCAAGCGCAGCACGCTCAGCAGCACCTGCGCCGCCTGCCAGAAACATGTCCACCTGGTGCAGAGGTTTCTGGTGGACGGCAAGCTCTACCATCGCAACTGCTTcagGTGCGTAGAGTGTCACAGCACTTTGCTCCCTGGATCCTACAAATTAGGAAGTGACTCCGGGGCCTTGGTCTGTACACATCACCTTGCAAGGCACGCCTTAGCCAATCGGAACGGCCGGCTAGATCTTAGTGAGAGACCAGTGGCAGGTCAGTCTGCCAGGATTGGTCGCAGCACAAGTCCTCGCACCTCGCCCTCTGAGAGGGAGCGGACCGAGACTCCTTCTCCAGTAAGCCAAACGACTGACGCGGCCGTGCCTACCAACGACTCTGCCACAGGCGCTGCCGTTACGACAAATGCAGCCGACTCTTTGGAGAAAGCAAAAGAGGTGGATGGAAGTGGCGAGACAGAGGTGATCCCAcgctcttcttctcctcccaaCCCTTTTGACGAGAGCGACGAAGAGGAGGACGAGgtggagaaagaggaagagactAAAACGCCAGCCAAATTAACCACCAACGGGGACCTTCCTTCCACACCGATCAGTCGCCATGAAGGTGCCAGTCGGCCAGTACCGGCACCCCGCCGGGTCCCTGAGCCCACCCCTCCGCCTCCTCGCCCTGCCCCTCGGGTTCGGCTACCCCGTACGGCAGACGGCCTTCCAGTCGGTGAATCCCAGAAGCCTCCGATTCCTCCCAAACCTCGAGAAAGATCCCAGTCTCCTGGAAGCCTGTCCGGTGGCACCCATAAACCCAAAGACCCACCTTGGCTCGCCCTGGTCCAATCAGAAGCCAAGAAGAAGaaagcccctccccctccccctgtcGGACTGGCAACCCCTCCCAATACAggctctctgtcctctctcaaaGGGGAGGGCTCCAGACCCAGCACGCCCCCTCCACCCTCCAACCCATTCGAGGACGATGAGGACGACGATGAGAATGGCGAggcagaggaagaagaggggagCGCAGGAAGTGCCATTCCACCCACAGTTGTGGCTAGTCACCCCTGGTACAGCATCTCTCAGCCGGCTGACGCGCCAGCAGCAGACACTCCCCCCAGTGGAGGAAGCTCGTCCCGCTCCGCCAGCCCCGGGAGTGCCAAGAGCAAGAAACGCCCGGCACCTCGTGCTCCACAGCCACCTGCAGGGCACCACGTTTTCCCTCACTCTCAGCCCTCCTCTTGCTCTCCCTCTCCAGCTCTGAGCACAGAGAGTCTGTCCTCTGGCTCGGACCACAGCTCCTCCCACCCCCCTGCGGGTGGCAGTGCCAGCAGCGACCAGGAGCACGCCTTCACCAAAAGTGTGTCGGAGCCTTCCATCTGTTCACCGTGTGACTCTGCGGcgtctccttcctcctcctcctcgaccGAGCGCCTGCCTCATCCTTCCCTAAGCCCCTACCCTTCTCCCGTGCCGTCAAATGCCAGCTCAGCTCCGACCACCCCACAGACCAGTCGCAGTTTTGGGAGCCAAGGGGCCGGAGCCGTACCACCACGACCCCCTACAACCCCCAGCCCATTGGCCTCAGAGGCCACCCAATCTCACAATAAGCGGATCTGTAAGGAGAACCCGTTTAACAGGAAGGCTTCCCCCTCCCCTGCTAAATCCAAAACCAAACCACCAAAAGGCCCTCGTCCTGCCAGACCCCCGGCCCCCGGCCATGGCTTCCCTCTAATCAAACGCAAGGTGCAGTCAGACCAGTACATCCCAGTGGAGGACATCCACGGGGAGATGGGGCAGCTGGAGAAGCAGCTGGACGAACTGGAGCAGAGGGGAGTTGAGCTGGAGAAGAAGCTGAGAGACAACCCTAACGATGAGGATGAGGAGCACCTGTTGGTGGACTGGTTCACTCTCATCCACGAGAAACACCTTTTAGTGCGACGAGAAGCCGAGCTGGTCTACACAGCGAAGCAGCAGAACCTGGAAGAGAGGCAAGCTGACGTGGAGTATGAGCTGAGGTGTCTTCTCAACAAACCAGAGAAAGACTGGAGCGAGGAGGACAAGAGTCGGGAGCAGGAGCTAATGGCTGAGCTGGTTACCATCATTGAACAGCGCAACCAAATCGTCAACAGCATGGACCAGGACAGGCAGAGggaagaagaggaggataaACTTGTGGAGGCCATGCTGAAGAAAAAAGACTTCCATAAGGATCCAGACGTTGACCAGCAGAAGAAAAAAGGGGCAAAGTTCAAACCCATTAAGGTGCTCAAGCGGCTGAGCCATAAAGGAGAACCAGGCAAGAGCCCCCGCAAGGAGAAAACACCATAGAAGGGACGCATCCTCCTCCAAGAGGATAGGAGACAGTTTCCTATATAACTGTGTCATTAATGACATGGAAGTGCAACCCAGAATCCATTCCCTGCTCACATCTTACTTGATGCTTCTccaaaaacaagtttcttcaGTGACTATTTTTTTGTTGCCTCCGTGTGTTTTAAGATAACAACTCAACTGCTTTTAAGAGCGGACGTGTTTGTAAGCTCTCTGGCCTTTCAAGCCAGCGAACTGTACACTGCACTGATTAGTTGCGTGTTGCTTCACTATCCTTGCGTTGCCCAGCATGTCTGCCCTGTAGGCCTTTTTATCAAGGTTCAGCAGAGGTGTGACTCGGCAGTTCGCTTTGAGTGAAGTGAGTTGGATGCACGTTGATCCCTCATATCTCTAAGTTTTTTAATCTGTTCCTGACTTACACTCGTTGGATACCTGTGTCCTCTGCTCCTCAATTCCAAAGGTTCCGACATGCACGAACATTTTGGAAAGCTGCAACTGTTGGCTCTTCTTTTCCCGTTGCCAATATGTTCTGAagcctcctcttctctttctccgaGTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13754 lncRNA downstream 12193 35931599 ~ 35931855 (-) True G10202
TU13752 lncRNA downstream 14788 35928749 ~ 35929260 (-) True G10200
TU13750 lncRNA downstream 22972 35920855 ~ 35921076 (-) True G10198
TU13721 lncRNA downstream 100911 35799621 ~ 35843137 (-) True G10174
TU13682 lncRNA downstream 241456 35698632 ~ 35702592 (-) True G10143
TU13960 lncRNA upstream 192750 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA upstream 192750 36162016 ~ 36166879 (-) True G10349
TU13978 lncRNA upstream 265039 36234305 ~ 36234691 (-) False slc5a10
TU13988 lncRNA upstream 307591 36276857 ~ 36280693 (-) False LOC120547992
XR_005637139.1 lncRNA upstream 312300 36281566 ~ 36284261 (-) True LOC120548049
XM_039807596.1 mRNA downstream 95587 35844287 ~ 35848461 (-) True klf1
XM_039807405.1 mRNA downstream 112749 35828755 ~ 35831299 (-) True LOC120563277
XM_039807489.1 mRNA downstream 112759 35828755 ~ 35831289 (-) False LOC120563277
XM_039807351.1 mRNA downstream 118880 35815772 ~ 35825168 (-) True nfil3-5
XM_039809084.1 mRNA downstream 204378 35732968 ~ 35739670 (-) False LOC120564231
XM_039813314.1 mRNA upstream 14980 35984246 ~ 35993088 (-) True LOC120566690
XM_039812701.1 mRNA upstream 52912 36022178 ~ 36041403 (-) False LOC120566152
XM_039812622.1 mRNA upstream 52912 36022178 ~ 36041403 (-) False LOC120566152
XM_039812538.1 mRNA upstream 52912 36022178 ~ 36041403 (-) False LOC120566152
XM_039812469.1 mRNA upstream 52912 36022178 ~ 36041403 (-) True LOC120566152
TU13574 other downstream 357466 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 466688 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 543574 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1486413 34452850 ~ 34457635 (-) True G9740
TU12854 other downstream 2425925 33497160 ~ 33518123 (-) False stox2a
XR_005640904.1 other upstream 241862 36211128 ~ 36211215 (-) True LOC120569591
XR_005640910.1 other upstream 243280 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 265517 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 312741 36282007 ~ 36282095 (-) True LOC120569597
XR_005640908.1 other upstream 313039 36282305 ~ 36282393 (-) True LOC120569600

Expression Profile