RNA id: XM_039812964.1


Basic Information

Item Value
RNA id XM_039812964.1
length 1826
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120566458
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 486626 ~ 555843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAACATCAACGTCAACTCAGTGTTGCCAGCCTCGGGTCACACTTTTCCTGCTAGACGTTTTGGAGATGAGGATTTCTTTTTAGTGTTATGACTGCAACACAAGATATGGCTGCTGCAAACTATCTGGCATCTGAAGATCAGTCtctgtgctccatctgtctggatgtgttcactgatccTGTCAGCACACCATGTGGACACAACTTCTGCAAAAACTGCATCACTGAACACTGGAATACTAGTAATAGGTGCCTTTGTCCCGTGTGTAAGGAGGGTTTTACCACAAGACCTGATTTGAAGGTCAACACTTTATTTTCTGCGATGGTTGTTCAGTTCAGACGGTCAGCTCAacagaaagccagcagcagctcagagcaacaagtgtccaaaccaggagaaattccctgtgacgtctgcactggaaccaaactgaaagccctgaagtcctgcctggtgtgtctggtcTCCTACTGTGAGACTCACCTGGTGCCTCATGTGACAGCTTCATGtctgaaaagacatcagctgatcgACCCTGTGAAGAACCTGGAAGGCAGGATGTGTACAAAGCACAAAAAACCTCTGGAGCTATTCTGTAAGACCGACcagacatgtgtctgcatgctctgcACTGTTTTAGACCACAAGAAGCATGATGTTGTTCCTCTGAAAGAGGAATATGAAGGAAAGAAGGCCGAGCTGGGGAAGAAAAGGGCTGAAATTCagcagatgatccagaagaggcgACTGAAGATTCAGGAGGTCAAACACTCAGTCGAcctcagtgaggaagatgcagacagagagatagcagaaggtgttcaggtcttcacttgtctgaaggagtctgttgagagaggcctgaatgagctcatcaacacgatcaaagagaagcagaaaacaacagaaaaacaggccgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagagaagcactgaggtggagcagctcTCACACTCTGAAGACCACCTCAATCTTCTCCAGAGTTTCCAGTCCCTAAACATCCAACAACCTCCCCCCACCAAGGAATGGACAGAGGTCGGCGTCCGTCCATCATCATATGAGGGGACTGTGGTGAAAGCTGTGGTTCAGCTGGAGGAGACGCTCAAAGAAATGAAGAAGCAGCTGCCTGAGGGTGAGCTGAAGAGGGTCCAGCAGTATGCAGTAGATGTGACTcttgatcctgatacagcaCATCCTATTCTCATCTTGTCTGATGATGGGAAACAAGTGAACCATGGTGATGTATGGAAGAATCTCCCAGACAACCCAGAGAGATTTTCTAAGTGTGCTAATGTTTTAGGAAAGCAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGTAAAACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGATCAACAGGAAGGGAATCATCACACTGAGCCCTGAGGATGGTTACTGGATAATATGGTTGAGAAATGGAAATGAGTATGCAGCTCTTGATTCCCCTccagtccctctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggaggttctggtctccttttatgacgtagatgctgcagctcttatctcctcctttactggctgctccttcaTTGAGAAACTCTTCCCATTCTTCAGTCCCTATAGGAATGAAGGTGGTAAAAACTCTGCCCCTCTGCAAACATAGTCAATTTAGTATCTAGTTCACGTCAGCCACAGCCAGTCCCAAAAAATGAGACGGTGTCTGTTCCTCGACTCAGATCAGTTAGATCAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106 lncRNA upstream 103952 409741 ~ 410462 (+) True G55
TU100 lncRNA upstream 127766 370651 ~ 386648 (+) True G50
TU99 lncRNA upstream 145117 369028 ~ 369297 (+) True G49
TU98 lncRNA upstream 168507 345628 ~ 345907 (+) True G48
TU76 lncRNA upstream 193635 319697 ~ 320779 (+) False rrp36
TU362 lncRNA downstream 130602 686445 ~ 692229 (+) True G261
TU299 lncRNA downstream 152310 708153 ~ 753720 (+) False LOC120566394
TU372 lncRNA downstream 252718 808561 ~ 811947 (+) True G270
TU290 lncRNA downstream 329264 885107 ~ 1195250 (+) True G195
XR_005640492.1 lncRNA downstream 335778 891621 ~ 892123 (+) True LOC120566926
XM_039813130.1 mRNA upstream 4942 486627 ~ 509472 (+) True LOC120566597
XM_039813120.1 mRNA upstream 4942 505368 ~ 509472 (+) False LOC120566597
XM_039813059.1 mRNA upstream 20132 486612 ~ 494282 (+) True LOC120566531
XM_039813048.1 mRNA upstream 40750 470745 ~ 473664 (+) True LOC120566520
XM_039813297.1 mRNA upstream 51551 458378 ~ 462863 (+) True LOC120566701
XM_039812793.1 mRNA downstream 58372 614215 ~ 619099 (+) True LOC120566389
XM_039812728.1 mRNA downstream 66537 622380 ~ 707991 (+) False LOC120566319
XM_039813197.1 mRNA downstream 66542 622385 ~ 639007 (+) False LOC120566631
XM_039813164.1 mRNA downstream 66608 622451 ~ 626465 (+) True LOC120566616
XM_039813187.1 mRNA downstream 76874 632717 ~ 639007 (+) True LOC120566631
TU279 other upstream 32524 477971 ~ 481890 (+) True G184
TU56 other upstream 299864 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 337352 175133 ~ 177062 (+) False LOC120560058
TU6 other upstream 363434 70004 ~ 150980 (+) True fbxo3
TU271 other downstream 27547 583390 ~ 598207 (+) True G176
TU268 other downstream 446583 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 461064 1016907 ~ 1019038 (+) True G199
TU395 other downstream 560781 1116624 ~ 1144413 (+) True G292
TU260 other downstream 588811 1144654 ~ 1158559 (+) True G165

Expression Profile