RNA id: XM_039813143.1


Basic Information

Item Value
RNA id XM_039813143.1
length 2153
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120566607
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1227358 ~ 1235973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAGAAGAGAGCAACAACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTAGAGACAagactctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGATATGGCTGCAGAAAACTATCTGCAATCTGAAGATCAAtttctgtgctccatctgtctCGATGTGTTCACTGATCCTGTCACCATTCCATGTGGTCACAACTTCTGCAAGAACTGCATCACTGACCATTGGAATACTAATGACCAGTACCTGTGTCCAATGTGTGAAGAGGCTTTTACCACAAGACCTGATTTGAGGGTCAACGCTTTCATTTCTGAGATGGTTGCTCAGTTCCGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagaatcacctggagcctcatctgaCAACGTCCGGCctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAGGGCAGGATGTGTACGAAGCATGATAAAcctctggagctgttctgtaagactgaccagacatgtgtctgcatgctctgcACTGTTTTAGAGCACAAGATGCATGATGTTGTTCCAATAAAGGAAGAATATGAAGGAAAGAAGGCAGAGTTGGGGAAGACCGAGGCGGAAATTCagcagatgatccagaagagacgaCTGAAGATTCAGGAGGTCAAACACTCAGTCGAcctcagtgaggaagatgcagatagagagatagcagaaggtgttcaggtcttcactTCTCTGATGGAGTCTGTTGAGAAAGGCCTGAATGAGCTCATCAACAcgatcaaagagaagcagaaaacaacagaaaaacaggctgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagaGTAGCAGTGAGGTGGAGCAGATCTCACACTCTGAAGaccacctccatcttctccagacTGTCCAGTCCGTAACAATCAACCACCCTGCACCCACCAAGGACTGGACAAAGGTCATCGTCCATCAATCATATGAGGGGACTGTGGTGAAAGCTGTGGCTCAGCTGGAAGAGACACTCAGTAaagagatgaagaagctgcttgaAGCCGAGCTGAAGAGGGTccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTTGTCTTATCCTGTCTGATGATGGGAAACAAGTATATCCTGGTGGTGGAAAAAAGAATCTTCAAGATAACCCAGAGAGATTTTCTCTTAATCGCTTTGTTTTAGGAAGGCAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTAAATGGGATTTAGGAGTGGCCAGAGAGTCGATCAACAGGAAGGCAAGCATACCACTGAACCCAAGGTATGGTAATTGGACTATATGGTTGAGAAATGGATTTGAGTACAAAGCTCTTGATGTCCCTCcagtccttctctctctgaagtctcaacctcagaaggtgggggtgtttgtgaaTTATGAGGCGGGTCTGGTCTCCTTTTTTGACGTAAATGCTGCAGCCcttatctactcctttactggctgcttcttcactgagaaactcttcccGTTTTTCAGTCCCTGTAAGAATGAAGGTGGTGAAAACAGTGCAcctctgatcatctctcctgtcaATTACATTGAGTAGGCTAATCACTAAAACACCAAATATGTCAAGCTGAAGTTTGAGTAAAATTGCAAAAGATGCTGCAAAAATATcttgatttatttgtatttgatgTAGCCACAGAAAACATATTGCTGAATATTTCATTGTGTCATTAAGCTTCATTCATTTCATGTATTATTTAAGTAAGGCTTCATACATCCtatagtgtctacagaacacaGTATGTGTTGCTGTTATACCGGGTATAAAAAGTTAGTTATTTGGTTAATTACTGGTCGCTTTGGCCgttttttggtgttttgtgATTACTGATAAAAAGGCATATGAGTCAAATCTGTAAATACGtgattgtaaaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290 lncRNA upstream 36613 885107 ~ 1195250 (+) True G195
TU396 lncRNA upstream 109702 1116624 ~ 1122161 (+) False G292
TU253 lncRNA upstream 218994 934177 ~ 1012869 (+) False LOC120566368
TU383 lncRNA upstream 263343 967330 ~ 968520 (+) True G281
XR_005640492.1 lncRNA upstream 339740 891621 ~ 892123 (+) True LOC120566926
XR_005640481.1 lncRNA downstream 66740 1302713 ~ 1303535 (+) True LOC120566887
TU416 lncRNA downstream 115547 1351520 ~ 1352050 (+) True G309
TU417 lncRNA downstream 118163 1354136 ~ 1354378 (+) True G310
TU430 lncRNA downstream 147157 1383130 ~ 1383452 (+) True G321
TU431 lncRNA downstream 148484 1384457 ~ 1384658 (+) True G322
XM_039803304.1 mRNA upstream 16257 1206918 ~ 1215606 (+) True LOC120560623
XM_039812780.1 mRNA upstream 60598 1138078 ~ 1171265 (+) True LOC120566383
XM_039813364.1 mRNA upstream 81365 1149006 ~ 1150498 (+) True LOC120566742
XM_039812687.1 mRNA upstream 106126 1116559 ~ 1125737 (+) True LOC120566319
XM_039813090.1 mRNA downstream 16795 1252768 ~ 1258104 (+) True LOC120566570
XM_039813000.1 mRNA downstream 24046 1260019 ~ 1267265 (+) True LOC120566489
XM_039813014.1 mRNA downstream 105651 1341624 ~ 1347194 (+) True LOC120566495
XM_039813377.1 mRNA downstream 127984 1363957 ~ 1369052 (+) True LOC120566750
XM_039813388.1 mRNA downstream 153796 1389769 ~ 1399264 (+) True LOC120566759
TU241 other upstream 12778 1193661 ~ 1219085 (+) True G151
TU260 other upstream 73304 1144654 ~ 1158559 (+) True G165
TU395 other upstream 87450 1116624 ~ 1144413 (+) True G292
TU294 other upstream 212825 1016907 ~ 1019038 (+) True G199
TU268 other upstream 222130 1002426 ~ 1009733 (+) False LOC120566414
TU237 other downstream 75894 1311867 ~ 1312431 (+) True G149
TU486 other downstream 300242 1536215 ~ 1536697 (+) True G355
TU495 other downstream 357849 1593822 ~ 1879546 (+) False G363
TU503 other downstream 543013 1778986 ~ 1836460 (+) False LOC120566853
TU525 other downstream 643645 1879618 ~ 1892664 (+) False G369

Expression Profile