RNA id: XM_039813187.1


Basic Information

Item Value
RNA id XM_039813187.1
length 2739
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120566631
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 622385 ~ 639007 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAAGTGAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTAGAGAcaagtctctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACAGTGATATGGCTGCTGCAAACTATCTGTCATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTCGCCACACCATGTGGACACAACTTCTGCAAGAACTGCATCACTGAACACTGGAATATAAGTGACCGGTGCCAGTGTCCCTTATGTAAAGAGGCCTTTACCACCAGACCTAATTTGAAAGTTAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgttcaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcttgcctggtgtgtctggtctcctactgtgagactcacctggatcctcatctgacagcttcacgtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCATGAAAAAcctctggagctgttctgtaagactgaccagacatgtgtctgcatgctctgcACTGTTTTAGATCACAAGACACATGATGTTGTTCCTCTGACAGAAGAATATGAAGTAAAGAAGATAGAGCTGGGGAGGACAGGGGCTGAAATTCagcagatgatccagaagagacgactgaagattgaggagatcaaacactcagtcgacctcagtgaggaagatgcagacactgagatagcagaaggtgttcaggtcttcacttctctgaaggagtctgttgagagaggcctgaatgagctcatcaacaccatcaaagagaagcagaaaacaacagaaaatcaGGCCAAAGCTTTcatcaaagagctggaacaggaaatctctgagctgatgaagaaaagcactgaggtggagcagctcTTACACTCTGAAGaccacctccatcttctccagagtGTCCAGTCCCTTAACATCCAACAACCTCCACCCACCAAGGACTGGACAGAGGTAAGCGTCCGTCCATCATCATATGAGGGGACTGTGGTTAAAGCTGTGGTTCACCTGGAGAAGACACTCAGTGaagagatgaagaagctgctccCTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcacatcctgaactcatcctgtctgatgatGGGAAACAAGTGAATCATGGTGATGTGAAGAAGAATCTCCCAGACAACCCGGAGAGATTTTCtcgttactgtattgttttaggaaaacagagtttctcttcaggcagattttactttgaggttcaagttaaaggaaacactgattgGGTTTTAGGAGTGGCCAGAGAGTCGATCAACAGGAAGAGAGAAATCACAGCGAGCCCTCAGAAAGGTTTCTGGACTATAGTGGTTATAAAGAGAAATGATTGCTACGCTCTTGCTGACCCTCCAGTCCGTCTCTCTCTGAAGTCTTTCActcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagctcttatctactcctttaatggctgctccttcactgagaaactcttcccGTACTTCGGTCCATATGATGGTGGTAAAAACTCTGCccctctgatcatctctcctgtcagagTAAACTAATCACTGATCTCATTTCaggtattgatttattttcaatCAAAAGGAACAAATATTTGACATCTTATTTTCTACATAATATGTTTCCTGTGGTGACTGATTTCcactttattacatttattatcaTATGGTTAAATGTGCAGCAATTCTTTGCAAGTTGAATCAAACTTCATCTTGACATATATGGTGTCTTTAGAAACTGATTTCTTCTGGAAGTTATAATGAATGTCTGTGGGTTTAAAAGAGGTTTAAATAGATATCGTCCACATAACGTGTCATGATGCATCAAATGATGTGTTGATTATGTAATCGGATacacatttatttgtatttgatgtgcagccacagaaaacatattgctgaatatttcattgtgtcatgaagcttcatttgagaGTGAGGCCTATTAAATCCCatagtgtctacagaacacaGTATGTGTCGTTGTTATACCGGGTATAACAAGTTAATGGATGTTTCTATCTTGTGTGAAAAGTGTTTTAGATAATTAATGGTCACTTTGGTcattgtttatttgtttcatgAATACTGTAAGATGGTTTATGAGTCAAAGAAATCTGTAACTATTTGATTGtagaataaaaactaaaataaagcgGTTATTGAACTGAAGGTCTGAGCAAGCAGTGACTTGAGCACTGGAGGAAATATACAGTAAGCAGAGCTTTTTTAACAATGCTGTTCCCTAAAAAAACTGGTCTACACAACAGGATGTGGACATATTCTAATTAAATCTATTGCAGATATCTAGAAAGTTATTTCTGACTAGGAAGATTTAAATACAGATACCTGCAATAAATATCCAGTATAGCTACTAAATGTTAAAACGGACACTTATACTATTTAAGGATTTAAATTTAGTTTTGACTAGTACAGTCAAAGTTGTAGATATCTTGAAAAACAATTGCTACAAGTAAGAATGTTATTgtggatatctttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320 lncRNA upstream 109728 522532 ~ 522989 (+) True G221
TU106 lncRNA upstream 222255 409741 ~ 410462 (+) True G55
TU100 lncRNA upstream 246069 370651 ~ 386648 (+) True G50
TU99 lncRNA upstream 263420 369028 ~ 369297 (+) True G49
TU98 lncRNA upstream 286810 345628 ~ 345907 (+) True G48
TU362 lncRNA downstream 47438 686445 ~ 692229 (+) True G261
TU299 lncRNA downstream 69146 708153 ~ 753720 (+) False LOC120566394
TU372 lncRNA downstream 169554 808561 ~ 811947 (+) True G270
TU290 lncRNA downstream 246100 885107 ~ 1195250 (+) True G195
XR_005640492.1 lncRNA downstream 252614 891621 ~ 892123 (+) True LOC120566926
XM_039813164.1 mRNA upstream 6252 622451 ~ 626465 (+) True LOC120566616
XM_039812793.1 mRNA upstream 13618 614215 ~ 619099 (+) True LOC120566389
XM_039812964.1 mRNA upstream 76874 514414 ~ 555843 (+) False LOC120566458
XM_039812940.1 mRNA upstream 95526 514414 ~ 537191 (+) False LOC120566458
XM_039812948.1 mRNA upstream 95526 528566 ~ 537191 (+) True LOC120566458
XM_039813428.1 mRNA downstream 8205 647212 ~ 678756 (+) True LOC120566787
XM_039812707.1 mRNA downstream 10372 649379 ~ 1125737 (+) False LOC120566319
XM_039812679.1 mRNA downstream 10372 649379 ~ 707991 (+) False LOC120566319
XM_039812715.1 mRNA downstream 10372 649379 ~ 658777 (+) False LOC120566319
XM_039812746.1 mRNA downstream 15791 654798 ~ 658771 (+) False LOC120566319
TU271 other upstream 34510 583390 ~ 598207 (+) True G176
TU279 other upstream 150827 477971 ~ 481890 (+) True G184
TU56 other upstream 418167 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 455655 175133 ~ 177062 (+) False LOC120560058
TU28 other upstream 559811 72084 ~ 72906 (+) False G11
TU268 other downstream 363419 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 377900 1016907 ~ 1019038 (+) True G199
TU395 other downstream 477617 1116624 ~ 1144413 (+) True G292
TU260 other downstream 505647 1144654 ~ 1158559 (+) True G165
TU241 other downstream 554654 1193661 ~ 1219085 (+) True G151

Expression Profile