RNA id: XM_039813974.1


Basic Information

Item Value
RNA id XM_039813974.1
length 6289
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120567135
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16246404 ~ 16283686 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTCTATAATGACTGTCCATTGGTTTTTATTACGGCTTGTCCCCCTCCCACTGGCCGGCTTCGCCCTGCCCATGTTTTCTATGTCTCAGTCCGTCCATCTCCTGACGTTCAAGTTCGTAGGAACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGTATCGTCGTACCCCCATCACTCTCTCTTTGCGAAAAAGTCATGAAGAGGTCCGCACAGCCCGTAGCGCGCGACGCCTCACCCTCTGCATGATCTgcacttcattttttttcttctttttcctatTTGGACGTCAGACGCATCAATGAAGAAATTTCATTTGGACTCTACCTTGTAGGAAGGATTTCCCAATGTGAACTCAGCTGAAAAGCCGCCACTAAACCAACATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTGAGCAAACGGGAGTTTTCGTCTGAGCCGCTGTCAGGTGTTTTACCAGGAGAAAACTGTCAGGACTCCCCCAGGCTGGGAGAGGCTCAGGGTGAGCCCCTCAAAGGGGACCAGGACCTGCTGACCTGTGGCCAGTGCCACTCCCGCTTCCCCCTGGCTGACATCCTGCTTTTCATTGAACACAAACGGAGGCAGTGCCACGGGAGCCTCTGTATGGACAAACCTCTGGACAGGCCACCGTCCTCCCCGCTCGCCTCTCCCCTGTCCACGTCCTCCTCGCACTCGCGGACCCAACTTCAGCACCCGCGGAGGGCGTGTCACCCCGTGGAGGTGGCCGTTCAGGTGTCGCCGCGCGACGAGGATTGTTTATCTGCACCCTTGCAAGGAATAATCCCCAAGCAGGAGAATATCACAGATAAAGATGAGCCAAGCAGTTACACCTGCACCACCTGTAAGCAGCCCTTCACCAGTGCCTGGTTTCTGCTCCAGCATGCCCAAAACACCCATGGCTTCCGCATCTATCTGGAGAGCAAACCTGGCAGCCCCCTCACCCCCCGCATGGCTGCGGCTCCTGGGATGGGGGGTGACTGTGCCTCTTCCCAGCCTCCCATCCATGCTGTCCACTTGGCTGATGGCAGTCCTTACAGCCTCCTGAGGATGCCGGGCTCTGGGTCTGGCCGGGATTCAGCATCTACACCTCGTGAGAGCCGATACCTCCGAACCCCACCGCTGTTCAGCCCGCCACCGCGCCACCACCTGAGCCCTGATGACCTGGCACTTGCAACCCACCATCCCAGCGCCTTTGACAGGGTGATGAGGCTCAACTCAGTGCCATTAGAAGCCCCTCCAATGGACTTCTCTAGACGTCTACGCGAGCTGGCTGGGAATGCCACTGGGTCTTCCCCACCTCTCTCCCCTAACAGGCCCAGCCCTATGCaacggctgctgcagccatTTCAGCCAGGTTCAAAGCCTCCATTTTCAGCTACGCCTCCCCTCTCCACCTCTCAGTCACCTTCTGGCTTACGCACCACCCCCAATCCCGCATCCAATGCGGCCCAACCGGGCACACCTCTCAAGGCAAAGTCTTGTGAATTCTGTGGGAAGACCTTCAAGTTCCAGAGCAACCTAATCGTTCACCGACGTAGCCACACAGGGGAAAAGCCATTCAAGTGTCACCTCTGTAACCATGCCTGCACCCAGGCCAGCAAGCTGAAACGACACATGAAGACACACTGTCAGAGCAAGTCTTTGGTGCTTAATGCCAAGTCAGATGACGGCCTCTCGACTGCAAGCTCCCCCGAACCTGGTACCAGTGATCTGATGGGCAGCGCCACAGATGCTCTCAAGTCAGTGGTGGCCAAGTTCAAGAGCGAGAACAATGGCCTATTGCCTGAAaatggagaagaggaagaggaggaggaggaggaagaagaggaggaagaagaggaggaggaagaagaggaagaagaagaggaagagggggaggaggaggaggaggaaattgAGACTAAGCctgaagtagaagaagaagaagaagaagaagaagaagaagagggtaAGAATGACTATCGTTTCAGCCTGCGGCTAGAAGGGGCCCGCTACCACAAGAACAGTGACGCCCTGCACCCACATCGCCGGAGCTTGTCCCGGGAGCCTGGTGACGAGGACTCGGCCCTGGAGTCAGACCGAGCAGATGATGGAACCACCACTATCGTCAATGGCCTGGGACCTCTATCCACTGACAGCCTGTCCAGGAAGCTGCTGAGTGGAGGGGTCAGCCCTGGTTCCCTCAGTCCCCTGTCCAAGCGCATCAAGGTGGAGAAGGACCTTGACCCCCCCACGCCCACTATCCCAAACACGGAGAACGTCTACTCCCAGTGGCTAGCTGGCTACGCTGCCTCACGTCAACTCAAGGACCCCTTCATCAACTTCACAGGTGGGGACTCTAGACAATCGCCCTTCGCCTCGTCATCTGAGCACTCGTCAGAAAACGGCAGCTTGCGCTTCTCCACGCCGCCTGGCGAGCTGGACGGGGAACGGGCCGCTTCAGGACGCAGCGGCACAGGCAGCGGGGCCAGCACTCCCCACGGGAATGGCAGGCCGAGCTCCAAGGACGGCCGACGCAGTGACACCTGCGAGTATTGTGGCAAGGTGTTCAAGAACTGCAGCAACTTGACAGTGCACCGACGCAGTCACACTGGAGAGCGTCCCTACAAGTGTGAGCTGTGCAGCTATGCGTGCGCCCAGAGCTCAAAGCTCACCCGCCACATGAAGACCCACGGACAGATGGGCAAGGATGTGTACAAATGTGAAATCTGCCACATGCCTTTTAGTGTATACAGCACTCTGGAGAAACACATGAAGAAGTGGCACAGCGACCGCCCTCTGGCTAATGACATTAAGACTGAGTAGGCAAAGAGCAGCATGCTGGCAGCTCTCTCTCAGCTCCCCTGGCTAAAAAGCAACCCTGGCTAACTAGCCAATAAGTGAGGGGAAAGGACAACAGGGTTAGACACCAGTACACGGTACAGCCCTGTTATCATCCCTGACTGGAAAAAGCTGAATGCATGATCCATCATTGGGGCAATACTATTGCATCAAACGCAAAACTTTTTGAGCCTTTCTATTGTGCAATAATTTACacgttttgtattttttgtaactGGACAGCATGCTCGGTGTGTTTTGGCTACTTAGAGAGAAAAATGTCCTTGGCTGGTGGGTTTGGTTGTACATGTATTGCTGTTGATACTTTCGATTtcttcaacataaaaaaaaagttaattatgAGAACCCATgctgcatacagtacatactgttTTACATATCATGTACAGTTTTGTGTTCAAACATAGTGGACAGTGTCATATTATCAAAACATCAAGACAAGCAGGGTCACACTTAAAACTGATCTTTGTGAAAGATTTTCCATGCAAGATTGAGataagagatatatatatatatatatataaaaattggGCTGCCTATGAAATGGCACGAACGCCATTAAATATTTCTTTGACAAACAGCAATGAAATTAACAATATGGTGtgaaatgacaacaaagagtGCCTTGGATATTTTACCTGCATTAGTTATCCTCCTTTTTTGCTATAAGCTCGGAGTTTCAGCTATAGAAGATTACAGGACATTTTTGTGCACATATGAAATAAACAGGTCCTTGCATCAAGCACCTGTACAACCCTGTCGTTTTATGACTTAGCAGAGCATAAGGAACCAGctgaaacaaaaatgaaaagaaaaaaaaaagattatgtgTACCTCTGGTAAATCATTTATCTGCCTGACTCATGTATATTGTTATTCTCCAGATTATGATTCTGTTTACTGGCATGTTACATGCTAAAAAGGAGTAGGTGTGTAGAGTTTTGGTTTAGGTGTTTATGTTTTCTGGTACATGTGTACCATACTGAGAGGGTAGTCTGACAAGTTGTTTTAACCAACGTGAAGCTCTTAATTTTCCAGagtgtttattttctttgaaaattaagaattgcagtttttcttttttttgtaagtaGCACAGAATTATGTTTCTTCTGTGTCAGCCAGGCAGCAGTGTAGCCAGCAGCCGCTTGGAGACCACAGAGTGGGTTTTAGTTGTTCTAAGCCAGACAGATTTTGGGTGAGGGTGGGGTTTTTTGGGTGGGTGTCGGAGGGTAAAAGGTAACGTGGTTCGGGGAGTGGGTTGACCAGGTGTCTCTACAATTCAAATGTTTATGTCCTTATAGCGCTTGTTCTCTTTACCGCATTAGATCTAAGAAACCCTTAAGTAATCTGAAACACTTTCTTATTAACTCATTGGAAACGATCTTAAACGGAAATCCCAATCTAAAGTCAAGAATCAGAATTTAGACGAAATCAACAAATTACCCCTTCCACACAAGTTTTTAAGAGTCAAATTTTTTACGTTTTGTGTTCTTTTCAGTTAACACGCCCTAGACCTTATTGTGgtagttgtatttttttttttttatctccatcCCGTCATTGTTGAAAATATAGCACTTGTCACTCTGCCTTGGATTCTGTATCTGTCTTTCTAATCGGAGGTACAGTCGGTTGAGTATAAAACGAGAACCGGATTTCCGATCTGGGACTACCTACATGCACTGTTCAATTTTCCCAGTTTACAGTCGGACACTCAAGGGAAAACTTGCTCTTATGCTGACAGATTAGTGTGGTGTCATTgctttgcattaaaaaaaaagaaaaaaagaaagaaaaaaaaaagagttgaacTGTTGCCAGCCATGTCTCCTCCAGAGCCAAACATCAGTTTGGCTCTTGGGGGTAATAATGCAGGAACCGCCATAGAAATATCCTGTTTCATACCAACTATAGAAATATACTGCTCAGTACAGAAATCTAcaaatttgatttaaaatgaTAAGTAAATCGTGTTGTTGAGTTTTTAAAGTAACACTTCAATATCTTTAGGGGAGAACCTTAtttaaattttgttttcattttttgtttattgtcgtttctcttttctgtcttGGTGACATCCGGGACTTGATCACTATGTAATGAATTGTAATGAACATGTCTCTCATCTTTTTTGCCTTTACTATACACAAGTCTTCAGGTTGAACAAAAATGTGCATTGGGGGAGAGATTtatgatatataaatatatagagaGAACTTAAAACACATAGGAAAATGCACACTCATGTAAGTTCCTATGTTCAAAACACATTTATGGTCTACTTTTTTCCTGTATTTAGAATGGTATTTGAAATTAATGTTCACTTAGTGTAGGCACTTATAGTATTTATGTTGGAGCCtgtatttttaactgttttgcctGTACTCTTTAAAGGTTTCAATGTACCCTTTTTTTCTGTagtgaaaaaaaatcccaaCAAGCTGCCACCGTATATTTTCTTAATTTGGCAGGATAATATAGTGTGAATAATTTGTATGCTTGAAAATAAGtatgtttttgaaaaataaattgtggagttccccaagggTGAGAGGTCATGTAATGGCCTTTTCAGGCAGTCCCGCTGGAGTGACCACAATGAGGTAAAAAAACAGGTGGTTGTACATatctttttagtttattttatatatttttctctcCTGCCATTTTATATGCAGTAATACAAGCTATTGTTGGGTTTTCTCGGTAGCCAACTTTTTACTGTCCTTGAACATGTACCACCTGATAACATTCCAGCCGTTTTCGAAAAAGACCTTTTGTCATATGCAATCAATCCAACATCAATCTGAAAAGCATGTTTTTTTGCTacagtttctttgtttgttattttggatttttttttttttcattgccaAAAGAACCATGGTGCTTTATAATTTAAATATGGTACATTTCATATGCAAGGCATATTCTAAATATAACGATAaatcagaaagaaaaaaaagtttggtaCATGTTATCATTGCTGATGGTATTGAGGTACATTTGGGTTTTCAGCCTGATTTCATCCTGTGTTCTGTATTTACTCTCAAGCTATTTGTTCTGAACTGAACTTGAAGTTGACCTACGGCATTGGTCGACATTATTTATtatggctacacacacacacacacacacacacacacacacatgctctgttCAGAATGGAGTCACTGCAAAACAAATCAGTTCATTTTTCTCCCTCCTGATGAATTGTGATGGCTTAATTCCTCTGTTTGATGACCAAAGGTCATTGACCAACTTTCATGAGTTCTTGCTCGACTTAcagattttgttgttgttgtttttcagttaTACGGAGATGCCACTCTATTTTCAGCTGTTGTCTGCATTATTCTCTTCACTCAGCCATTTTGtcttgataaaaataaaaagtattacATACATATCTGAA

Function

GO: NA

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6617 lncRNA downstream 196775 16049388 ~ 16049629 (-) True G4886
TU6610 lncRNA downstream 197524 16047844 ~ 16048880 (-) True G4881
TU6580 lncRNA downstream 252319 15993604 ~ 15994085 (-) True G4860
TU6529 lncRNA downstream 464651 15781397 ~ 15781753 (-) True G4815
TU6513 lncRNA downstream 510226 15735789 ~ 15736178 (-) True G4799
XR_005639170.1 lncRNA upstream 28243 16311929 ~ 16315887 (-) True LOC120558721
TU6843 lncRNA upstream 41329 16325015 ~ 16325323 (-) True G5068
TU6844 lncRNA upstream 41835 16325521 ~ 16325846 (-) True G5069
XR_005639169.1 lncRNA upstream 62032 16345718 ~ 16346195 (-) False LOC120558720
TU6857 lncRNA upstream 64580 16348266 ~ 16349983 (-) True G5081
XM_039805913.1 mRNA downstream 168061 16064549 ~ 16078343 (-) True sec23b
XM_039804834.1 mRNA downstream 188051 16050764 ~ 16058353 (-) True LOC120561637
XM_039795602.1 mRNA downstream 211789 15994372 ~ 16034615 (-) True nomo
XM_039804658.1 mRNA downstream 347003 15816338 ~ 15899401 (-) True LOC120561525
XM_039803969.1 mRNA downstream 560765 15428356 ~ 15685639 (-) False sdk1a
XM_039799790.1 mRNA upstream 68955 16352641 ~ 16356941 (-) True wfikkn1
XM_039799845.1 mRNA upstream 73377 16357063 ~ 16362428 (-) True LOC120558696
XM_039799777.1 mRNA upstream 81579 16365265 ~ 16381421 (-) True LOC120558661
XM_039799768.1 mRNA upstream 81579 16365265 ~ 16367912 (-) False LOC120558661
XM_039799748.1 mRNA upstream 100100 16383786 ~ 16402403 (-) False pdcd11
TU6504 other downstream 816848 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 1342195 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1527302 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2679138 13531753 ~ 13567266 (-) True G4168
TU5473 other downstream 3206170 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 62084 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1426960 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 1547006 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 1560250 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 1596182 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile