RNA id: XM_039814409.1


Basic Information

Item Value
RNA id XM_039814409.1
length 1550
RNA type mRNA
GC content 0.54
exon number 3
gene id lyl1
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24091667 ~ 24096223 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccctcctcctcctcctcctcctcctcctcctcctcttcctccccatcCTGTGCCTCCGTAGAGCAGCACAGTCCACTCCAAAACAGGCCTTTAGCATCCTCGTACACTATCAGCAGCCCGTGTCCTGCTAACAAGACAGGGCACAAGGGACACACGAATGTCCCCTCTGTTGACTCGATTCAGTCCCCCATTGCCACGGCGACGGCGTTAACCAGTCACAACGTAGGGACAGCTACTGCACCTGAGCCCATCGTCATGGAgaccgaggaggaggaggaggaagaagaggaggagaagcgAGGAGGACCAAAGTGCACCACAGCCCCTTCTGCTTCTGCCAAGGGGTCCCCAACTCTTTCCTCTCCACCTCCACTCCTCCCAGCGCCAGCCAAGACCTCCATGTCCACTTTACCACCACCAACCTCCACCAGATCCTTCCCTTTGTCTTTAtcatcctctcctcttcctccacacATTCCAGTCATCAGCCTCGGTCACAGCAAACCCCCTCTCCCGCTCCCTAATACCCCTTTGACTGCCCTCCACCCAATTCCCAGTCTCCTACATGGGCCCCATGGGGACCTTCGCCGCAGTCAGCTGGCCTGTTTGCCTGTGGCCAGCCCTGGAGCTTCTGGGGGCCATTCAGCTCCCTCCCCAGGACCCCTGTTGCCTCAGCAGTACCTGTCTGCACACCCCTTCTTCACCAGTTCTTACCTGGGTCCTTCAGGAGGAAACTATGGTGTCATCAACAGCAGCCGGATCAAGAGAAGACCCTCATCGCACTTTGAGATGGAGATCAATGATTGCCCTGCACACTCAGACAGTGATTATGTGTGTCTAACAGGCCCTCCTCAGAAACTCGCTCGCCGTGTCTTCACCAACAGCCGCGAGCGCTGGCGACAGCAGAACGTAAACGGGGCTTTCTCTGAGCTGAGAAAACTCATTCCCACACACCCACCAGACAAGAAGCTCAGCAAGAATGAAATCCTCCGTCTGGCTGTAAAGTACATCAACTTCTTGGTCACTCTGCTCAATGACCAGGCACAGGACAAGAACAAGGACTCAGCTGAGGACGAGCGCAGCACCACTGGGTTGGACAGTAATAAACAGAACCGTATTTTTCAGTGCAACACTCCTTCTCCGTCCCACGCCACCCCGCCATCCTCAGCACGTCCCACCACAGTCCACAGAAACTCAACTGACTCAGTCATTGCTCTGGCTGACTCCCCAGCAACATCCAGTTGCTATGGTGACACAGACAGTGAGGAAAGCTTTGGGGCTAAGACCTCTTTGGTGACACAGGGCATTCTGGggaaggtcaaaggtcagatacGGATGGTGGCAGCCACAAATGATGAGCGGTGACACCAAAAGATGACAAACAAAGAGGTGTAAATGTCACACTGACAAGACAGGACACAATCACTGCCAGATTCCAAAAAGGGTTTGTGGAGCCAGTATGATTCTCATTTCAACTCCCAAGTAGTGAAATGGAATTTTGGAGAATTTTTGTAGTTTTAACTATCTCTGTCTTTTGCAGTGATGTG

Function

GO: NA

KEGG:

id description
K15604 LYL1; protein lyl-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9804 lncRNA downstream 7391 24082513 ~ 24084276 (-) True G7179
XR_005638833.1 lncRNA downstream 31823 24056501 ~ 24059844 (-) True LOC120556287
TU9760 lncRNA downstream 35907 24015459 ~ 24055760 (-) False G7141
TU9757 lncRNA downstream 37194 24036876 ~ 24054473 (-) True G7141
TU9751 lncRNA downstream 148094 23939973 ~ 23943573 (-) False LOC120556236
XR_005640574.1 lncRNA upstream 469 24096692 ~ 24099093 (-) True LOC120567450
TU9951 lncRNA upstream 348957 24445180 ~ 24449314 (-) True G7292
TU9993 lncRNA upstream 440157 24536380 ~ 24539504 (-) True G7324
TU9994 lncRNA upstream 443741 24539964 ~ 24541406 (-) True G7325
TU10016 lncRNA upstream 461255 24557478 ~ 24557697 (-) True G7343
XM_039795744.1 mRNA downstream 22839 24066928 ~ 24068828 (-) True LOC120556266
XM_039806733.1 mRNA downstream 205905 23882745 ~ 23885762 (-) True LOC120562828
XM_039794043.1 mRNA downstream 280646 23772856 ~ 23811021 (-) True palm3
XM_039804326.1 mRNA downstream 345636 23736038 ~ 23746031 (-) False si:ch211-207j7.2
XM_039817383.1 mRNA upstream 37674 24133897 ~ 24135669 (-) True LOC120569492
XM_039811894.1 mRNA upstream 41165 24137388 ~ 24145207 (-) False zglp1
XM_039811885.1 mRNA upstream 41165 24137388 ~ 24145207 (-) True zglp1
XM_039811905.1 mRNA upstream 49179 24145402 ~ 24149825 (-) True fdx2
XM_039816060.1 mRNA upstream 118470 24214693 ~ 24217245 (-) False cdkn2d
TU9657 other downstream 280703 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 311343 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 322826 23752026 ~ 23768841 (-) True G7071
XR_005638947.1 other downstream 377581 23711827 ~ 23714086 (-) False LOC120557242
TU9627 other downstream 518618 23572705 ~ 23573049 (-) True G7065
TU9991 other upstream 436013 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 659709 24755932 ~ 24759600 (-) True LOC120543531
TU10312 other upstream 1602038 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 1687721 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1905301 26001524 ~ 26003263 (-) True G7722

Expression Profile