RNA id: XM_039814621.1


Basic Information

Item Value
RNA id XM_039814621.1
length 5274
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120567658
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14616189 ~ 14645852 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGGAGCTGCCGCAAAGCCCCGTCCTCCAGGGCTTTTTAAACACCGTGTTTGCTTCACGCTCCAACAATTTCATCCAGTTGAAGAGCGGCAGCGCTCTATGCACTGAACCGACGGTCATCGTGGGAACAGCGCCGACGAGCACAAACCATTGTGGTTAAAGAAAGAAAACGACggcataaacaaacaaaaaagggaagATACTGTATTGCGGGTCAACGAGTTTAACCTCTAATCTGCCGTGGCATTGTTGCTCTCGGGGAAGGCAGTCACAACAGGAGGGTGTCTCGGTGAAATGAGAGCGGACCCGGTCGGTGACCGTTATTCCGTTGTTTTCAATGTGGTTGGCGTTGCAGCCGACTCGGTCGTTGCAGCTAGCTCGGTACGGCCGCGTTGATGCAGCAGCGCACGGCTGTGGTGTTCAAATCCACCACCGGATCTGGGAAGACAATAGGTGAAATATACGCCGGCCTGGACTCCCAAGACTACACCAAACGAGAGTCTGCATCCGCTTTGGCTTCGCTAgTGTCCGTGTGAGGAATCGGTTTAGAAAGTGAAGTGACAGCGGGCAGGTAGCTGGATCAGGATGGCGGCCGTAGTGAACTACTCCCCGCCTTGGTGGGTAAATCTGCTCCACCGGTTGCCTCATTTCAACATTGAATTCCAGCTTGTGAGCAGTGACTTCAGACCGGAGGACTCTGAGTACCAGAAGTCCATTTTGCTGCTTGGGGCTGTGGCGTTGCTTTGTTTGGGCCTggacctcctcttcctcctcttctactCATTCTGGCTTTGCTGCCGGCGACGCAAGAGTGACGACTCCTCGCACTCCCACACGCACTCCCATCAGCCCAGCGCCGACTGCTGCTGCACCGCCTGGTGCGTCATCATCGCCACGCTCGTCTGCAGCGCTGGCATTGCTGTAGGATTCTACGGAAATGGGGAGTCGAGTGATGGGGCCAATCGTTTGGCGTACTCCCTTCGTCATGCCAACCGCACCGTGTCAGGGGTGGAGAAACTGGTGTCAGACAGTGCCCTAGCCTTAAACCAGACAGTGGAGGAGAGCTTAGTCCAGTTGGAGACAGCTTTCCAGGAGCAGACAGACTACGTGTCCATCGTCCAAAAGTTGCAGGGACAGCTGGACGAGCTGGTAAGGCTGATGGTGGATATTCCCTTCTGGTCCAATACTGAAGTTTCCCTGGAGGACTTGGCCCGCAAGACGGAAGCTTTTGATTTTTACAGGTGGCTGGGGTACCTTAGCCTGCTGCTGTTTGATGTACTCATTTGTCTTCTGGTGCTCTTCGGCCTTATACGCAACTCTAGAGGCACTCTGATAGGAGTGTGTCTGCTGGGTGTTTTGACTCTGATAATCAGCTGGGGGTCTCTCGGCCTGGAACTGGCTGTCGCTGCTTCAGCCAGCGACTTCTGCGTTTCCCCGGATACCTACATCACCAGGGTAACCAAGGAAAACGCTGTCATCAACCAAGATATTCTGCAGTATTACCTGAGGTGCAGCCCGGGCCAAATTAACCCCTTTCAGCAGAGGCTGTCAGGGAGTCACAAAGCATTGGTGGAGATGCAGGATGATGTGGCAGAGCTACTGAGATCAGCAACACGTGACCATGCCAACACCAAgGGGAGTCTGGAGCAAATCCAGTCTGTACTGAATTCCACCGAGGTTGGTCTTCACCAGCTGACTGCTCTGGTCGACTGCCGCAGCCTACACATGGACTACGTTCAGGCATTGACTGGGCTGTGTTATGACGGGGTGGAGGGTGTCATCTACCTGGTTCTCTTCTCCTTTGTCACTGCTCTGATGTTCTCCTCCATTGTGTGCAGTGTGCCACATACCTGGCCTGGCaagagGACGGATGAGGAAGACGGAGAGGATGAGTCGGGTGCCTCACGGGGCGGTGTGCACGATAACCTGTACCGCGTTCACATGCCCAGTCTCTACAGCTGTGGCTCCAGCTACGGTAGCGAAGCTAGCCTGCCCGCTACAGCCCACACTGTCAGCAATGCCCCCGTCACTGAATACATGAGCCAGAACGCAAACTTTCAGAACCCTCGGTGTGAGAACACCCCCTTGATTGGCAGGGAGTCCCCTCCACCCTCTTACACCTCCAGTATGAGAGCAAAGTACCTGGCTACCAACCGACCGGACCAGAACCGACGCTCCGTTCCCAACGACCAACTGGACCCAGCTAGCCGGGCTCACCCCACTGCCCGACCACAGTCCTCAGTCCACTAGAAACTGTCCACAGAACTGCAACAGTCCACCCCAGTACTGCCTAAATCCAGTTTTCACAgccaataacaataataatatccAACTCAGCGTTCACCAGAGCTCAACCAGAGCGCAGCGTTTAAAGCACCTACAGGACCCATTGAATTACACCGACCGGTTCACCAGAAACAACAACTCAGCAAGTCAGAACTCATCAACCAAGCACCTCAGCAAAGGACCGCACTTTGAAGATCGACTTCTACTTCGCACCCCAAATTATCCAAAAGTTAAAAAGATGAAGCGCATCTCAGAAAATTTCTACTCCTCTTCttagtggacacacacacacacacacacacacacacaccccaagcTGCTCGTTCCCCCACTGCTGTTATGGATCAGCCCacatacccacaatgcacagcaaCTAAAGCGCCTTGGCTCTGTCTCCACTTTCTTCTACTACTTTTCAGTTCTCTACCCCTCCACTGGGATCCATACACTGTCCTCCAGTGGAGACAGCTCTCACTACTCAATCCCCTGAGACTTTTACATTCagaccacacactcacacacagacaagcgacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtacagaccTGTAAATAGTAAACGTGTGCTTTACTCTGATTTCATGAGAAGTGGACTGTTGAATCATTACTGGTAATGTGGTGTGCTGCGTGTTTCTCATGGAACTTTTTGCTGTATCtctcatataaacacacacacacacacacacacacacacatatagacggACACATCTGTATAAATAATAAGCCAGTGAATTAGAAAGCCATGTTTAGATAAAAACAGTACCACCACATCCTCTTTAGCTTAGTCTAACTAGGACTTGAATCGTGCTCGAAAAGTGTGTCCACATCTctttctgtatttgtttacatgcacatacagtacacatgtCGATTAAGGCATTTTTAACATAAGCATAAGCCAGAAATCCTGTTGTGGAATAACTGTTATGAATTTTGGGGATTGAAGCGAGAGACAAAGGACATGAAAAGGTTCAACCTGTGccaaaaaaactgaataatgATTCTGTCCTCATCTTCTACTGCCTCCACGTCTCAAAGAAGGGAAAAGAACTTGGAATCTTGGAATGTTTTCCCGActgtaaataaaaagggaacGGTAAAGAGACTTGAAAAAGGAAAACGATGGACAGAAATCAGATAAGACTCACTGAAAATTGCGACTACACATTTGCCAGGTGCTACGTAAGCCAGTCAAGATCCCAGAAGACGATCAGGAATGAGGAGGGACGGAAacgtttttggtttttttattactttaatgttttgttttcattcagGGATGTGATCAGGAacataaaaagcagtaaaaataaaacagctttCCATCATTACTGAAAGGAAGTTGTGTCCCGAGtcctgaaaaaaaatcatgtccCTAATAAATAATGTTACATAAAAGTGTTTCAAAATGAAGGAAAGTGggtgtttttcatgttttatcatAAGCTGAATTCAGGATGTGATACTGTGACCAAGTAGTATTCTGTTTCTTCttctatactgttttttttctctcttcctgtgtttttattttgttaactggTGATCTTGGATCAACTTTTAGCCAATAGTTGTGAGTctatcttttatttaatttttttacccACAAGCACAAATTCTCTTCGAGGTGACTTTGTGAGATGCTTTGCGAGATGGAGAAGTAAAACACACTGCCTGGGACACTGCCAGTGGTTTTTCCTCCCGCTCTAAAACTCTCTGTACAGTGTATAAAAACTGTATTCGTGTACCCGTGTGTGTGACATCACTGCAGTGTGATTGGCTATTGCTCTATCTCAGTGTTACTGTGTGTAAGTACGGTGAACAGTGTGTCTGACTGGCAACAAGCAAGGGCCAGCCTATCTAGCCTGAGTCATTTCTACACAGACGCCACGCATGCCCTCATACACACGCAttgaaacacatacatacatgctgTACAGACATTTACATTAAATACACACCACAGTTTCTCATAAAAACCCATCTTTCCCTACTTTTGTCCTGTTTACATTCACATATAGAGCTCTAGTAACTGCACGCCCTCCCACAGCTGTGACATCACTACTGATAACCATTTGCATTATGGGTGATGTAGTAGGTAGTAACCGCATTTCAGAGAAACCTGGAATGTAGTAATTAGCTGAGTGAGCAGAGCCCTAACATTCAAACACCTTTCAACCACCATTCCTGTATTCGagcattttaatattgtattaataATCAATGACCACTTCTCGTATTAGCGAGACAATCTTAAACTTGTGATTTTACTAGAAAGAAAATGTCCATGTTATGGTAACAATGCTACCTATGGTCTAGTActttacagtgttttttttgcaccaTAAATGCAAACAATGTTAAGATCTGTGGGACTAGTCACTGATTAATGGCCTTTCATAATGTTTTTAAACTGTTACAGCACTCTTCATAtcacaacatgttttttttttctttccttttttttctctctctgtcttgtaaaaaaacaaactttaaagaTAAAATAATAGCTAGCTGTTTTGTAGGAGAATAAAGGCAAGAGCAGCGTTTTTCCTCTCTTATTAATGGTGAATGACTCTCTGTCTTGCAATGTTTTAATACAACTATTCCAGTGTAATCTGCACACCTGACTTAAAGTTGTATTTGAATTCCTGGAATTTGAATTGGGATTTAACCAATCTGGTGCAGTCTGCTGTCttgatggggggaaaaaaagatttaagagtccgccatgtttgtgtgtatatgtggtcATTTTCAGGAGTTCAAGTACACTTGTGTCCAGATGTGACAGACAAACAATGTTTTCTatggctgtttttattttggtttaacTAAGATATTAATGATGTACATGTCAAAACTGTGGTAATGATCATTCAGCCTggaataaatgtttaaaaaaagaaattaaagcaACTTTAACATACTGA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005254 chloride channel activity molecular_function

KEGG:

id description
K22641 TTYH; protein tweety

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6065 lncRNA downstream 176526 14439456 ~ 14439663 (-) True G4450
TU6056 lncRNA downstream 318737 14297089 ~ 14297452 (-) True G4443
XR_005639156.1 lncRNA downstream 507496 14105951 ~ 14108693 (-) True LOC120558606
XR_005639155.1 lncRNA downstream 537190 14078317 ~ 14078999 (-) True LOC120558586
XR_005639154.1 lncRNA downstream 544642 14070847 ~ 14071547 (-) False LOC120558581
TU6214 lncRNA upstream 205111 14850961 ~ 14852833 (-) True G4566
TU6324 lncRNA upstream 323631 14969481 ~ 14970706 (-) True G4658
TU6326 lncRNA upstream 325530 14971380 ~ 14973191 (-) True G4659
TU6335 lncRNA upstream 353291 14999141 ~ 14999689 (-) True G4663
TU6343 lncRNA upstream 367075 15012925 ~ 15013189 (-) True G4670
XM_039814595.1 mRNA downstream 25573 14557895 ~ 14590616 (-) False LOC120567649
XM_039814585.1 mRNA downstream 53090 14557895 ~ 14563099 (-) True LOC120567649
XM_039796274.1 mRNA downstream 100353 14442379 ~ 14515836 (-) True mad1l1
XM_039805465.1 mRNA downstream 363342 14242155 ~ 14252847 (-) True parn
XM_039791172.1 mRNA downstream 386284 14225177 ~ 14229905 (-) True eri2
XM_039814641.1 mRNA upstream 1169 14647019 ~ 14664075 (-) True iqce
XM_039795113.1 mRNA upstream 52832 14698682 ~ 14710964 (-) True palb2
XM_039795121.1 mRNA upstream 56858 14702708 ~ 14710968 (-) False palb2
XM_039795148.1 mRNA upstream 66294 14712144 ~ 14718653 (-) False LOC120555938
XM_039814487.1 mRNA upstream 159900 14805750 ~ 14807316 (-) True LOC120567499
TU5715 other downstream 1048923 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1575955 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 1575955 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 1575955 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 1587796 12991667 ~ 13028393 (-) False LOC120560419
TU6167 other upstream 66353 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 255300 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 780694 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 1699920 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 3064796 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile