RNA id: XM_039814978.1


Basic Information

Item Value
RNA id XM_039814978.1
length 1669
RNA type mRNA
GC content 0.45
exon number 2
gene id mchr1a
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22993868 ~ 22997980 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCGTCAGACGAGTCAAGATGCTCTCACAAGCTCTTTATCAATACCGATGAACGGCTTTATCGTCACTGACGGCACAGAGCTTATAGAACCACAAGCTGCTTGTGCTGTAAagaatttcattttttaaaacagGATTTACCTTGATGCATTTTACTTGGGAAGCAGGCACTtagcaatactttttttttttacttggatATACTTTGAAATACCCATGGATTTCTTAAACGATAGTAATTTTTCCCTCGGAGACACTAatacaacaacatcaacaacagCTGTAGATGGGGCTCTTCACTGCAGTGCCATCCTCCCCGTCATCTTTGGAGTCATCTGCTTTCTGGGTATCATGGGGAACTGTATTGTCATCTACACCATAATGAAAAAGACCAAGTGCTGTGCCAAGCAAACTGTTCCAGACATATTTATCTTAAATTTGTCAATTGTTGATCTCCTGTTCCTCCTTGGTATGCCATTCCTCATCCACCAGCTGCTGGGCAACGGCACCTGGCACTTTGGAGCTGAAATGTGTAGAGTCATCACTGCGCTTGACTCCAATAGCCAGATTGTCAGTACTTACATCCTCACTGCAATGACCCTCGACCGTTACTTGGCTACGGTCCATCCCATCCGCTTCAACTACATCCGCACACCTTGTGTGGCAGCGCTGGTCATTGGCCTGGTGTGGGGTCTGTCCTTACTCACCATCATCCCTGTGTGGATGTATGCAGGCCTGATGGCTCTACCTGATGGCCTGGTGGCCTGTGCTCTCCTTCTGCCTGACGCAGTCACTGACATATACTGGTTTACACTTTACCAGTTCTTCTTGGCCTTTGCTATACCTTTGGCCATCATCTGCCTGGTGTTCTTCAAGATCCTCCAGCACATGTCCGCCAGCGTTGCACCACTGCCTCCGTGGAGTTTGAGGGTGCGCACCAGAAAGGTGACCCGGATGGCAGTGGCTATCTGCCTGGCTTTTTTCATCTGTTGGGCCCCTTACTACATCCTTCAGCTGATCCATCTAGGGGTGCAGAAGCCAAGCATAGCTTTCTCCTATGCCTACAACATAGCTATTAGCATGGGATATGCTAACAGTTGCATCAACCCATTCCTCTACATTATCCTTAGTGAGACCTTCAAGAGTCAGTTTCTCAGGGCTGTACGCCCAGTTAACAGAAAGTTCCGTGTGAACCCGAGCACCACAGAGGGTggcagtgtgagtgtgagaatGGTACCTGAAGGGGCTCAGCAGGAGCCAGCCTCTCGGGAGATGATACCATCCAACATGGCCCCACAATAAAGAATCCAAATAACGTGCAACTGTGGATCTTTGCAGCTGGTAAGAACTATGAATGGGACGTTATCATCAAGAACACAtcgggtttttcctgcatagaggaatttttggTGCCCCCCAAAGAGCTTTAAGCCAGCCCTAAaggaaaatcactttttttttattcacaaaaattgagaataaaaatagcaattcaaatctTCTCTAAATGTGTTTAAGAGCAATTTATTAAACAACCGTTAAACAGGCAGAACACAAACTTGAATATAAGAGCTAATCTCAGTTTTATCTCCAGAGTAAGGCTGTACCAGACTctcttaaatattaatattattttttttttttatttttttaaccagttttgttaTT

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030273 melanin-concentrating hormone receptor activity molecular_function

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9328 lncRNA downstream 20542 22972882 ~ 22973326 (-) True G6880
TU9327 lncRNA downstream 59977 22924831 ~ 22933891 (-) True G6879
TU9272 lncRNA downstream 325128 22665470 ~ 22668740 (-) False LOC120565362
TU9261 lncRNA downstream 340082 22651532 ~ 22653786 (-) True G6834
XR_005639888.1 lncRNA downstream 389915 22601388 ~ 22603953 (-) True LOC120562974
TU9360 lncRNA upstream 55339 23053319 ~ 23058150 (-) True G6907
XR_005638858.1 lncRNA upstream 132474 23130454 ~ 23134183 (-) False LOC120556418
TU9408 lncRNA upstream 132538 23130518 ~ 23134314 (-) False LOC120556418
TU9409 lncRNA upstream 132538 23130518 ~ 23135775 (-) False LOC120556418
TU9411 lncRNA upstream 132538 23130518 ~ 23135775 (-) True LOC120556418
XM_039794020.1 mRNA downstream 159404 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 273053 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 273053 22692787 ~ 22720815 (-) True pik3r5
XM_039811163.1 mRNA downstream 310131 22665375 ~ 22683737 (-) True LOC120565362
XM_039805339.1 mRNA upstream 172827 23170807 ~ 23173617 (-) True LOC120561952
XM_039782309.1 mRNA upstream 422300 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 432957 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 432957 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 432957 23430937 ~ 23438265 (-) False znf207b
TU9329 other downstream 5368 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 954717 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1284056 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1609025 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1670889 21322898 ~ 21322979 (-) True trnas-aga
TU9396 other upstream 90520 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 215876 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 574725 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 713847 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 754046 23752026 ~ 23768841 (-) True G7071

Expression Profile