RNA id: TCONS_00006505


Basic Information

Item Value
RNA id TCONS_00006505
length 2584
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_003324
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12860260 ~ 12875188 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAGCGCCGACTGATGACGACAGAGTTAGATCAAATTCGAGCGACTCCCAGTTAGCTGTCTGGGAAATATTCTCCACCGTTTCCgtcaaaaaaagcaacaaaacaatgCCGCGAAGACGACCAACGCACTATCTGAAATTTCCTCTACAACAGTGAGCTCCTGTCATGCAAACAAACAACCCGCAATGGATGAAAGCAGTCTGGAGGAAGCCATCGGGACCTACAGAGCTCAGCTTCAGCAAGTTGAGCTGGCTTTATCTGCTGGTTTGGGATCAGCAGAGCAAGATGACCTTCTGAAGCTGAAGGAGGACCTCCAGCAGCTCATCGAGCTAACAGAGTCCAGCTTGGTGTCTGTCAAAAAAAGCCAATTGCTTGCTGCTTTGGAGGAGGCTTCCACCAACCAAAGTGACACTTCTGTTCCTCAAGAAACTGCTTTGGACAATGAGTTTGCCGCTTTTTATGCAGAACTATCTGAAGACTCTAATGAGGTAAAACCAAACCCTGATACTGATGAGGAAAACGAGGAGGAAGAGCAGGATATTAGTGGAACTAAAGTTTGTGCACCTTACCGTACCTCATGGGGAACCCTAGAGTACCATAATGCCATGGTGGTCTGTCCTGAAGAGCCTGAAGGAGAAGAGGCTCGAGTCCGGGTTTTTTACATTCATCCCACACACAAATCCATGAAACCCTGCGGCTTCTACCTTGAGGGAAAGTGCCGCTTCATGGACAACTGCAGGTACTCTCACGGTGAGGTGGTGTGTGTATCAGAGCTCAGAGACTTCCTGGAGGCCGACATCAGTAACATGGAGTCGGGCTCCGCGTGTTTGGCCAAGCATGAAGATGGCATCTGGTACCCAGCCAGAATATCAGAGATTGAAGGGGGTTTTTACACAGTGAAATTTGACTCACTGCTGTTGAAGGAGGCTGTGCTGGAGGCTGATGGGATCATTCCTCCTCTTCGTCAGGATGATgtttcctcctcttcctcatcgGACTCCGAGGATGATGCTGAGTGTGATGGAGGCTATGCTAAAGTATTCACATCAAGAGAAGAGGATTTGGCCCAGGTAAACACTGCTGAGTTTTGCGGTTGGGAAGCTCACACACGTGGCATTGGCTCAAAGCTCTTAATGAAAATGGGTTATGAGCTTGGTAAAGGCTTGGGAAAAACTCTCTCTGGTCGTGTCGAGCCAGTTCAGGCAGTGGTTCTTCCCAAAGGCCACTCATTGGATATATGCGCGGAACTTACTCAGAGAAAAACTGCAGCTGCTATTGCCAAGAATAACCCGACCTCACATAAAAGAAAGGCTAAAAAGAAGAAAGCGTCCACATCCACACGCCACAATGTTTTTGACTTTCTAAACTCTAAGCTCGGTGATAGAGCTCAGTCTGCGTCTCATTCCTCAAGCTCATTGGTCACTGGTGCAGAGGCCTATAGGGGTGGAAAAAGCACCAAACGGTCCCTTAATGTTCGTCTGTTTGAGGCCGCGGAGAAAGTCACTCAAGTTGAAAGAGAGATCCAGCAACTTACTAAGTCTCTCAGTAAACGGAACGGAAGGGATGCTGCTGTGGTCAGTCGCCTAGAGGAGAAACTCGCAGCCTCCCGCAAGTTACTGGAGCAGCTAAAGGCTCAAGAGCAGGCCATCCAGAGAGAGCAGAAGAAGGCAGACACTCATAAGAAAATGACCGAATTCTGACACATCTGCTGTTTTTTATACCATTATTAGGGATTTTTCATTTTAGTGTTAAAACATTATTATGAGTTTGGTATGTATTAAAAAAATGGATGTACTATAAAATCTATGATATTCAAATTCTTACCATTCTTTTTGATTTAATGTGTATTTCAAGGGTTCAGGTTATTTGGATTAATGAGGACAGAAAAACATTTTGCAGCTGTTGTTtgggattgttttgttttacaaattacAATATACACACGGACTCAATAGTTTTTCATATATAGATGCATAAATAACCTCTTAATACAGGGGTGCACacactcagttctggagggccagtgtcctggagagtatAGCGCAGGGATGTCGAATGTGTGGCCCACTTGCCGGATCAGGCCCATAAAAGGGTTTATCTGGCCCGCGAGATAATTCTGTAAAGTATGAAAATGAGCTTCAAATTTTCAATAAAAGAAACTGCTGGTCCAATCGTGTCCACTGGATGCAAAAGCAATTTCAAACTGTTCATTTTAACTGTTAATCAGCATCAGTTTCACAGCCTTTTCAGAGAGAAAGACCGCATTCCCTGGCAAACCTCGCTGAGGTgttctcatgaggaaatgtaactgttttacattttgtcagtttagtggctaattcatacaagttcagttgtttgaaaatgtatgattttaataaggaggcatggcacccaaccacacccctaaacctaaccgccATTGGTGAATGAGCAAATCCTACTAAATTGTGCAAATGAGATAGtacaaattttatttgaattagccattaaatcaaaaagttacaaagtgctgtgagattgtgttttcCTCAGGCTCCAGCTTTATGTTTTATGTTGATCTATTAAAACGATCAAAACAA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1248 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of epidermal growth factor-activated receptor activity; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZGPAT (zinc finger CCCH-type and G-patch domain containing).

Ensembl:

ensembl_id ENSDART00000037474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008574 lncRNA upstream 75379 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00006501 lncRNA upstream 108077 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00006494 lncRNA upstream 142036 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00008394 lncRNA upstream 337409 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006480 lncRNA upstream 366261 12493872 ~ 12494177 (+) True XLOC_003304
TCONS_00008395 lncRNA downstream 6562 12879727 ~ 12880871 (+) False XLOC_003325
TCONS_00008396 lncRNA downstream 16126 12889291 ~ 12889880 (+) False XLOC_003325
TCONS_00006518 lncRNA downstream 278754 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006523 lncRNA downstream 314970 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00008575 lncRNA downstream 320558 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006503 mRNA upstream 1175 12811906 ~ 12859263 (+) True XLOC_003323
TCONS_00006499 mRNA upstream 89892 12744575 ~ 12770546 (+) False XLOC_003321
TCONS_00006500 mRNA upstream 91811 12744617 ~ 12768627 (+) False XLOC_003321
TCONS_00006502 mRNA upstream 91812 12744644 ~ 12768626 (+) True XLOC_003321
TCONS_00006498 mRNA upstream 132787 12720308 ~ 12727651 (+) True XLOC_003320
TCONS_00006507 mRNA downstream 6470 12879635 ~ 12955738 (+) False XLOC_003325
TCONS_00006506 mRNA downstream 6470 12879635 ~ 12955738 (+) False XLOC_003325
TCONS_00006508 mRNA downstream 23839 12897004 ~ 12925696 (+) False XLOC_003325
TCONS_00006510 mRNA downstream 150837 13024002 ~ 13055802 (+) False XLOC_003326
TCONS_00006511 mRNA downstream 159318 13032483 ~ 13038233 (+) True XLOC_003327
TCONS_00006493 other upstream 148442 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 166175 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006491 other upstream 174839 12685304 ~ 12685599 (+) True XLOC_003316
TCONS_00006490 other upstream 180410 12679732 ~ 12680028 (+) True XLOC_003315
TCONS_00006489 other upstream 236587 12623555 ~ 12623851 (+) True XLOC_003314
TCONS_00006509 other downstream 56992 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006540 other downstream 944404 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006541 other downstream 991681 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006553 other downstream 1326731 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006565 other downstream 1460276 14333441 ~ 14340783 (+) False XLOC_003351

Expression Profile

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