RNA id: XM_039816049.1


Basic Information

Item Value
RNA id XM_039816049.1
length 1674
RNA type mRNA
GC content 0.45
exon number 12
gene id ap1m2
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24217368 ~ 24223061 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGTCACGACACCTTCATGAAAAAGAAACGGAGGAGTCCATGATCACCTCAGGCCGATGAAAATCTCTAGTTTGGATGGCGAAACGAAATTCCAAGCAGTGAAGTGCTCGATTTGAACTTTAATCGGAGTTTGTGTGCTTTGTAGAGTCGCGTGCTGTTCTCCTGTGGGTACAAACACCATGTCTGCCTCCGCTATATTTGTTCTGGATCTGAAGGGAAAGGTGTTGATTTGTCGGAACTACAAAGGCGATGTGGACATGGCGGAGATCGACCACTTCCTGCCTTTACTCATGCAGCATGAAGAGGAAGGGCTTCTCTGCCCTGTATTGTCACATGGCAATGTCCACTTCATGTGGATCAAACACAGCAACCTGTACCTGGTGGCCACCACAAACAAGAACTCCAACGCCTCCCTTGTGTACTCATTTCTATACAAACTAGTTGAGGTGTTCACAGAGTACTTCAAAGAGCTGGAGGAGGAAAGCATTCAGGATAATTTTGTGGTCGTCTACGAGCTGCTGGATGAGCTGATGGACTTTGGATTCCCTCAGACTACCGACAGCAAGATCCTACAGGAATACATTACTCAGCAAGGTACCAAGCTCGAAGTGGCAAAGTCCAAGGTGCCGACCACCGTCACCAACGCTGTCTCCTGGAGGTCTGAGGGTATCAAATACAAGAAGAATGAGGTCTTTATTGATGTCATTGAGTCAATCAACGTATTGGTGAATGCCAATGGAAATGTGATGAGCAGCGACATTGTGGGCAGCATCAAGCTGAAAACCATGCTCTCTGGGATGCCAGAACTGCGGCTGGGCCTCAACGATCGAGTGCTCTTCGCTCTCACTGGACGTGACAAAGGAAAGACAGttgtgatggaggatgtgaagTTCCACCAGTGTGTCCGACTCTCACGCTTTGAGAGTGATCGAACAATCTCTTTCATTCCTCCAGACGGGGAGTCTGAACTCATGTCCTACCGCATCAATACCCATGTGAAGCCTCTGATATGGATTGAATCAGTCATAGAGAAATTCTCTCACAGTAGAGTGGAAATCATGGTTAAGGCAAAGggacaatttaaaaaacagtcTGTGGCAAATAATGTGGAGGTAAGGGTCCCCGTCCCCAGTGATGCTGACTCACCCAAGTTCAAAACCAGCACAGGCACTGCCAAATATGTGCCTGAGAAGAACATGGTGGTGTGGACCATCAAGTCTTTCCCTGGAGGTAAAGAGTTTCTAATGAGAGCTCACTTTGGTCTACCCAGTGTGGAGAACAATGAGCTTGAGGGAAAACCTCCCATTACAGTCAAATTTGAAATCCCATACTTCACAGTCTCAGGAATACAGGTGCGATATATGAAGATCATTGAGAAAAGTGGTTACCAGGCTTTGCCATGGGTCCGCTACATCACACAGAGTGGAGACTATCAGCTGAGGACCAATGTGTAAAGCCTGGGGGATTACTATATTCCTCACTAGGACCTCCAGAGGAGCAGCAATGATCACTTAAACAACTGGACTGAAAGAGTGTCTTTAAATTCCACCTGCTCTATTTAATGTCAGCAATCTTGTTTTATGAAATCTGTTTGCAACttgattttaatgtttttattgtggTACCACTCCAAATTAtttaaatgcataattaaatgattcctttaaaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640574.1 lncRNA downstream 118275 24096692 ~ 24099093 (-) True LOC120567450
TU9804 lncRNA downstream 133092 24082513 ~ 24084276 (-) True G7179
XR_005638833.1 lncRNA downstream 157524 24056501 ~ 24059844 (-) True LOC120556287
TU9760 lncRNA downstream 161608 24015459 ~ 24055760 (-) False G7141
TU9951 lncRNA upstream 222119 24445180 ~ 24449314 (-) True G7292
TU9993 lncRNA upstream 313319 24536380 ~ 24539504 (-) True G7324
TU9994 lncRNA upstream 316903 24539964 ~ 24541406 (-) True G7325
TU10016 lncRNA upstream 334417 24557478 ~ 24557697 (-) True G7343
TU10023 lncRNA upstream 362965 24586026 ~ 24586319 (-) True G7348
XM_039816060.1 mRNA downstream 123 24214693 ~ 24217245 (-) False cdkn2d
XM_039816054.1 mRNA downstream 123 24214693 ~ 24217245 (-) True cdkn2d
XM_039811905.1 mRNA downstream 67543 24145402 ~ 24149825 (-) True fdx2
XM_039811894.1 mRNA downstream 72161 24137388 ~ 24145207 (-) False zglp1
XM_039811885.1 mRNA downstream 72161 24137388 ~ 24145207 (-) True zglp1
XM_039809453.1 mRNA upstream 4359 24227420 ~ 24241325 (-) False ldlrb
XM_039809444.1 mRNA upstream 4359 24227420 ~ 24241324 (-) True ldlrb
XM_039805222.1 mRNA upstream 22612 24245673 ~ 24274926 (-) True LOC120561874
XM_039805213.1 mRNA upstream 22612 24245673 ~ 24274334 (-) False LOC120561874
XM_039805205.1 mRNA upstream 22612 24245673 ~ 24274334 (-) False LOC120561874
TU9657 other downstream 406404 23774725 ~ 23810964 (-) False palm3
TU9658 other downstream 437044 23774725 ~ 23780324 (-) False palm3
TU9637 other downstream 448527 23752026 ~ 23768841 (-) True G7071
XR_005638947.1 other downstream 503282 23711827 ~ 23714086 (-) False LOC120557242
TU9627 other downstream 644319 23572705 ~ 23573049 (-) True G7065
TU9991 other upstream 309175 24532236 ~ 24535316 (-) True G7323
TU10046 other upstream 532871 24755932 ~ 24759600 (-) True LOC120543531
TU10312 other upstream 1475200 25698261 ~ 25699557 (-) True G7589
TU10328 other upstream 1560883 25783944 ~ 25788229 (-) True G7603
TU10486 other upstream 1778463 26001524 ~ 26003263 (-) True G7722

Expression Profile