RNA id: XM_039816127.1


Basic Information

Item Value
RNA id XM_039816127.1
length 648
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120568545
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19640531 ~ 19644093 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCAGTCCAGCAGAGGGCGGTGGCGGCCTCGCTGCTGCTGCCTTTTGCTCATGAAGAAAAAGCACTTCCGTTGTTCCACTCTGTCACTTTGTACAGCGAGACAGGCAGAATGGCAAGCCGTCGTGTAGCCCTGAAGGCCATTGACTGGCTGGCGTTTGCTGAGAGGGTTCCACCCAACCAGAGGGGCATGTTCAATGCACTGAAAACTCGCAGTGATGCCATCTCTGCCAAACTAACCTCTCTGCCAGAGACTCCTGCAGCCATTGACTGGAGTTTGTACAGGAGCACAGTGGCCAAAGCCGGGATGGTTGATGAGTTTGAGAAGAAGTTCAAAGCCCTGCAGATCCCGGAGCCTGTGGACACGCAGACAAGCGCCATCAGTTCACAGGAGGCTGAATCTAATAAAAGTGCATCTGCCTATATTGAAGGATCTAAGGCCCGCATCGCTCAGTATGAGCAAGAGcTGGACAAGTTTAAGAACATGATCCCCTTCGACCAGATGACCATCGAGGACCTCAACCACACCTTCCCCGAGACCAAGTTGGACAAGGTCAAACACCCCTACTGGCCCCACAAACCCATTGCGGAACTGTAATCCTATTACTGGACACTCACCTCACAATAAAGtttatgtattttaaatcaaa

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02138 ATPeF0D, ATP5H, ATP7; F-type H+-transporting ATPase subunit d

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 91373 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 126580 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 144403 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 152512 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 246264 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 107508 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 120800 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 122404 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 195061 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 273023 19917116 ~ 19920280 (-) True G6242
XM_039785051.1 mRNA downstream 658 19604429 ~ 19639873 (-) False pnpla6
XM_039785216.1 mRNA downstream 658 19604429 ~ 19639873 (-) False pnpla6
XM_039785291.1 mRNA downstream 658 19604429 ~ 19639873 (-) False pnpla6
XM_039785132.1 mRNA downstream 658 19604429 ~ 19639873 (-) False pnpla6
XM_039784983.1 mRNA downstream 658 19604429 ~ 19639873 (-) True pnpla6
XM_039825483.1 mRNA upstream 1408 19645501 ~ 19647903 (-) True LOC120574931
XM_039816558.1 mRNA upstream 36571 19680664 ~ 19690245 (-) False caly
XM_039816550.1 mRNA upstream 36571 19680664 ~ 19690244 (-) False caly
XM_039816545.1 mRNA upstream 36571 19680664 ~ 19690244 (-) False caly
XM_039816536.1 mRNA upstream 36571 19680664 ~ 19690244 (-) True caly
TU8277 other downstream 94604 19509261 ~ 19545927 (-) False G6084
TU8138 other downstream 658227 18971993 ~ 18982304 (-) False mcrip2
TU8084 other downstream 750311 18884968 ~ 18890220 (-) True G5930
TU7664 other downstream 1758772 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 1795127 17843936 ~ 17845404 (-) False LOC120556682
XR_005640950.1 other upstream 83028 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 84003 19728096 ~ 19728310 (-) True LOC120569594
XR_005640939.1 other upstream 84974 19729067 ~ 19729281 (-) True LOC120569665
XR_005640946.1 other upstream 85935 19730028 ~ 19730242 (-) True LOC120569683
XR_005640942.1 other upstream 86890 19730983 ~ 19731197 (-) True LOC120569670

Expression Profile