RNA id: XM_039816240.1


Basic Information

Item Value
RNA id XM_039816240.1
length 3330
RNA type mRNA
GC content 0.52
exon number 22
gene id ncapg
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26874713 ~ 26889605 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCGCGagaacacacaactgtttgaaAACAGGCGGCAGTGTTGCGAGAAGAAAACGGAAGAGAAGATGACTGCAGACAATGAAATAGAGATTAAAGAGGCGTTTCAGCGCGCTCAGAAGGGTCACAATAACAAGGCAAAGCTGGTGGCAAGCCTGAACAGCCGCTACAACAAGCTTGAGGACAAGACACTGTTCCATGAGGAGTTTGTCCACTACCTGAAGTACGCCATGATTGTCTACAAGCGTGAACCTGCAGTTGAAAATGTCATAGAGTTTGTTGTGAGGTTTGCCACGAGTTTCCAGTCTCCACCTaaaacagaggaggaggaggaagcggaggaggaagaagaagatgcTGAGGATGATCATCCATTTTTGAGTTTCATCTTCAATTTCCTGTTGGAGTCTCATAAAGCCAATAGCCATGCGGTGCGTTTTCGTGTGTGCCAGCTGATCAACAAGTTGCTAGGCAGTATGGCAGAAAATGCCCAGATAGACGACGACCTCTTTGATCGCATCCACCAAGCCATGCTAGTCCGTGTCACTGACAAGTTCCCCAATGTAAGGATTCAGGCTGCTTTGGCCATGACACGTTTACAACAGCCAAAGGATCCTGACTGTCCAACCATCAacgCGTACATGTTGATTCTGGATAATGATTCTAATGCTGAAGTGCGACGTGCCGTTCTTTCCTGCATTGCGATGTCCCCTCGGACCCTCCCGAAAGTACTTGCACGCACCCGGGACATCAAAGAGAACGTCCGCAAGCTAGCTTACCAGGTTCTGGCTGACAAAGTTCACATTAAAGCTTTGACCATCGCACAGAGAGTTAGTCTACTGCAGCAGGGTCTCCATGACACCTCAGaagCGGTGCGGGAGGTGGTTTGTTCTCGCGTACTGCCGTCCTGGATGCTTCGGCTGGATGGTAACGTCATAGAGCTGCTCCACAGGCTGGATGTAGAGAACTGTGCCCAAACAGCTCTGGACACACTGAAAGCCATCTTCAAAGGCACACCTACTGAAGAACTGCTGCAGAACAGAGCGCAGCTCGACAACAGGAAGCTGATCCCAGTAGAGACTCTGTCCTGTGAGAATGTGCTTTACTGGAGAGCTCTGTACGAGTTCATCAAGGCTAAAGGAGAAGATGGTGATGAAATACTGGAGCAAGTGTTACCAGACGCTGCCACTTACGCAGACTACCTCTATGgGTATCTGAAGGCAGTGCCTTTGCTGTCAGAGGAACAGAGGGCTGACTTTACCCAGCTGGAGCTCGTCATGACCAAGGAGTTCATCGCCCAACAGCTCATCCATCTCATCGGATGTCTGGACACCAATGAGGAGGGCGGCAGGAAGCGCGTGTTGGCTGTCCTGCAGGAGATGTTGGCTCTTCCACAGACTCCCTCCTCCCTGGTCTCCCTTCTCATGGAAAAACTCCTCACCCTCGTTCCTGATGACCACAGACGCATACAGACTGTGGCAGAACTCATCTCCGATCTGAGGGAGCCCATCAACGAGGCCAGTCAGCCAGTGGATGAGAACATGAGCCGCCGGCAGCAGGTCCAGCTAGCAGAGGTGAAGGTGAGTATCTTGGAGGCTAAACAAACCCTGGAGGACTGTATCACTACCCAGGACTTCAGCCGTGCTGCAGATCTGAAGGACTCCATCACTGAGCTGGAGAACCGCAGGAACCAGATCATCCAGGACATCGCAGAGAGTAGCCAGCCGGCCGACAAGGAGACCCGCACCGAGAAGaatGACCCGGAGACTCTTCTAAGGTGTCTAACAATGTGTGCAGAACTGCTGAAGCAAATGAGCATCAAGACACGAATTGGTCCAACTATAAGTGCCTTAATGTCCTCACTGGTCCTGCCCAGTATAGCAAATGCTCACCCTGCTGTCCGTAACATGGCCGTGCTGTGTCTGGGAACATGCACCCTGCACAGCAAGGAGCTGGCCAGAACCCACAtggtcctgctgctgcagATTGCCCAGCTGGATGAGGTAAAGATCCGCATCAGTGCTCTGCGGGCCATCATcgacctgctgctgctgtttggcTTCCAGCTGCTCTCTGATCCAGCTGCTACTCCGACAGTCCTGCACTCCCAGTCaccagacagacaggaggaggaCGCACCCGTGGCCGAGGAGAACACTGCACAGAGTATACTTGTGATGCTTTCAGAGTTCCTGGACAGTGAGCTGTCTGACCTGCGTACAGAGACCGCGGAGGGCCTGGCCAAATTAATGTACAACGGCCGTATCTCCAGCGCCAAGATGTTCTCCCGTCTGGTGCTGCTGTGGTACAATCCTGTCACCGAGGGCGACACCCGGCTACGCCACTGCCTCGGCGTCTTCTTCCAGCTCTACGCCCGCGAGAGCagGGTCCACcaggaggtggtggaggagggcTTCCTGCCGACTGTTCGAACTCTGATGAATGCTCCAGCCACCTCTCCGCTAGCCGAGGTGGATATTAACAATGTGGTCGAGCTACTTGTCGAGCTGACTCGTCCGAGTGCTCTTATTAAGGCCTCCGCTAACACAGAGGAGGTGTGTGTCCATGACTACTTGGCGGTGCGTATGTGTGGGGAGATGTTGAAGGACCCCACAGCCCCTGAGGTGCGTCTCTATGCCAAGACTCTAAGCAACCTGGAGCTCAGCAGAGATGAGACTGTCAGGAAAGACCTGCAgatgctgctgcagcagcttgTACAGGTGGTGAAGGATCGTGTCTGTCTTCGTGCTCTGGAGAAAATGATTCATCAGCTAGTGGACTCCAAAGAACAGGCTGAGCTCCTCAGCGCTAGCGCACTACAACCAGTGGATGTCAATGCAGATGAGGTGGCAACAGACGATCCATCTAAATCTGCCAAGAGAGCCAAAAGAGGTCAGAGGAAAGTCTGCACAGCCAAAGGGGGCAAAAAGTCGAGCAGGAGGGCAGAGTCATCAGAGGAGAGTGATGGAGAAAATGTTCCAGAGTCAGTTCCTGTGGTGCGTCCCTCACGGAGGGCCAAGACTGCAGCTCTAGAGAAGACGAAGCTGGACCTCAACACCCTCATCAACCAGGAGGCCAATGTGTCGTAGGAGTCAGGTTATTAATAGTTCACGCAAAAAATGGAAATTTGTTACTTTTTAATTGATGTGGAGCTATTCACTTACTCTTTTATAGTAAAAATTGACAAATTAACCAAACCTTCTCTGACTGCAAGCCCTTACCATGGGGTCACCTCTTTATAAGGTGTCatatttccctttttatttctgtatgctTCAGTTTCAGATTGTCATTTTAATCATTAAAGTGAAATATGTCAATAAAGCATGTcc

Function

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0000796 condensin complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10906 lncRNA downstream 1108 26867425 ~ 26873605 (-) True G8024
TU10905 lncRNA downstream 9432 26861187 ~ 26865281 (-) True G8023
TU10816 lncRNA downstream 86789 26739826 ~ 26787924 (-) True G7971
TU10814 lncRNA downstream 184583 26682971 ~ 26690130 (-) True G7969
TU10776 lncRNA downstream 236873 26629781 ~ 26637840 (-) True G7948
TU10911 lncRNA upstream 6825 26896417 ~ 26914727 (-) True G8027
XR_005640036.1 lncRNA upstream 35574 26925166 ~ 26925792 (-) True LOC120563938
TU10922 lncRNA upstream 70831 26960423 ~ 26960916 (-) True G8037
TU10971 lncRNA upstream 201877 27091469 ~ 27091754 (-) True G8081
TU10983 lncRNA upstream 290442 27180034 ~ 27183685 (-) True G8087
XM_039796488.1 mRNA downstream 94465 26694993 ~ 26780248 (-) False slit2
XM_039796438.1 mRNA downstream 94466 26693345 ~ 26780247 (-) False slit2
XM_039808394.1 mRNA upstream 26790 26916382 ~ 26931485 (-) True haspin
XM_039807040.1 mRNA upstream 106569 26996161 ~ 27012421 (-) True LOC120563023
XM_039807042.1 mRNA upstream 106569 26996161 ~ 27011379 (-) False LOC120563023
XM_039811675.1 mRNA upstream 175383 27064975 ~ 27066480 (-) True si:ch211-113e8.11
XM_039816608.1 mRNA upstream 226448 27116040 ~ 27128186 (-) False ankrd49
TU10756 other downstream 295908 26567067 ~ 26578805 (-) True smim14
TU10758 other downstream 295908 26567614 ~ 26578805 (-) False smim14
TU10760 other downstream 295908 26567614 ~ 26578805 (-) False smim14
TU10761 other downstream 295908 26567614 ~ 26578805 (-) False smim14
TU10744 other downstream 338977 26533852 ~ 26535736 (-) False LOC120566984
TU11635 other upstream 2416429 29306021 ~ 29339824 (-) False rnf24
TU11633 other upstream 2416456 29306048 ~ 29339824 (-) True rnf24
TU11778 other upstream 2699716 29589308 ~ 29593623 (-) True G8701
TU12128 other upstream 4081796 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 5050129 31939721 ~ 31948554 (-) False znf827

Expression Profile