RNA id: XM_039816337.1


Basic Information

Item Value
RNA id XM_039816337.1
length 2717
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC120568678
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6269260 ~ 6286424 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttaaaaaaataataataatatcccGATGCATCTCTGTATGCGCAAAATCCGAGCATCTTTGTTGCTCTTGAACGCAGCCCCGAAAGGAACTCTGGGAATAACAAGATGGCGGGACGTTCGAAAGTTCTTCCGACAGACAGGCCGACTTTACTACaaaataaactgtaaataaaaaggCGTAAAAGCAAAAACTGGCAACCGGTACACCGGCAACAGACCGCCCGGTAACGGCCGGTAACCATGAACCGGGGCCGCGGGAATATTAATCCTCTGTCCGGTCTGATTGTGACATTGTCTCCGCAGCAGCAACAGGCGGCGGCCCCGTCAAAGCCTAACCGACTGAGGAGAAGTTTCAAGCGGACTCAGCAGACGCAAATATCGGCGGAGCTCGGCTCTCCGAGGAGCCAAGAGCCCGAGTTTAAGACCCCGACGAGGATCCAGAGACCCCGAGCCGTCGGGGGATTCAGTGCCGAATCTCCGCAGAACGACTCTGACTTTCAGCAGGACATCATCTGGGACGCCACCTCTCCGTCACCCAACAGACTCGGTAAAAGAGGCAAGAAGCCGCCGGTCGGAGTCGCGAACATCTCCGAGATCGTTAACAGGATCGCTCCAAAGCACGGCAGGCCCACGGTTGCCGAGCCGACGCTGCAGCAGTGGATCGGAGACAGCGCCGCCATTCCCTGCACGCCGGACGTTCAGGTCCCCAAACCCAAGAAGAAGTCCCCCAGGCCGAACGGCGTGGACGACCTGCTGAAGCTCGCCAAACAGTTTGACCTCAACATGTTCCACCAGGACGAGGAAGCAGCGGAGCAGCAGCACCAGCACAGCCTGGAGCTCCTGTCGGAGGACATCTTGGATTTCGAGAACGACTTTTCTTCGCCTTCGCCTCCCGGTGACCGCCCGCCTGCCGCCAAGGCGCCACCGCCACCGGATCACCACATGGAGGACGACTTGGACTTCCTGTTCGACGGGCCGACCCAACTCGTGAGCGGGAATCTGAGTCAGGTGGCTTCGACCGCTCGGCCGTCTCAGCCGCAATGGAAAGCTGCGTTTCCCGAAGAGGCTTCTGGGAAACCGGCGCCGTCGGCTTCCTCGCAGCCTCCTGGCGTTGCCGCGGCGCGCGCACGCCAGGGCGCTTCGGCGCCCGACGAGTTCGAGGACGACTGGGCGGATGACGACTTGCTGCTGGACGACTCTCTGGTGTTGGAGGTGACCCAGAACCCGCAGAACTTCGTCGCCCCCAAGCACTGTTCGACCCAGAAGACGCCAAGTCCACTGGCTGAAGccgtccaatcagctgttccCAAAGTCGCCCAATCGGCTGTTCCCAAagtcgtccaatcagctgtttatCAAGTCGCCCAATCAGGAGTGACTAATAATACGTATCAAAGGGAAAGTCCCGTTCCTAAAGCCGTTCAATCAGCTGTTCCTAaattcatccaatcagctgttcctcaagtcgtccaatcagctgttccTCAAGTCGTCCAATCAGCGGTTTATCAAGTCGCCCAATCAGGAGTGACTAATAATACGTATCAAAGGGAAAGACCCATTTCTaaattcgtccaatcagctgttcctcaagtcgtccaatcagctgttcctcaagtcgtccaatcagctgttcctcaagtcgtccaatcagctgttccTAGCGTGGGAAAGGACAACGTGCGGCAGAGAACGACTTTCAAACTGGAGTCTAATCCGAGTTTCTCCGTCGCGAGAACCCAGGCGGCCGCGTGGTCGAACTCGAAGGCGGATCCCGGTTCCAAAAAATCCGAAAATGGCGCCCGGCTCTCGTCGGAGCCGCAGAAAGCGCCGTTTCCCCGAAGGACTTCTGTTCCCCGAAACGGCGCGGCAGCTTTGTCGTCGAACTCATCGGCCGCGAACGCTGCTCGGGGCTTCCCGACGACCGCGGCGGTGGTTTCGTCTCGCGGCGGCGCCGAGGAAGCGCCGGCCGTCTCCGACCTTCCGGACGTGGACCTGTCGGCGTTCTTCGCGGCCGACCCGGCGTGGGACGACCCGGCCGACGACCACCTGCTGTGCGAGATGTGCGACGACCTCGAGAACCAGACGCAGAGCGCCGAGAGCGTTCCCGCCACACGGGCTCCCGCCGCGGGCCAGAGAGCGGCGCTGCAGCCGTCCAACAGGAAGCTACCGCCAGCCAATCGGCAAGCTTCCCCCCGTCAAAAACAGACTCTAACCCAAACAGCACGTCTCCACGGTGACTCGGGCCGGTcggcgccgccgccgccgcGCGGAAACGACCGCAAAGACCAGTTCACCTTCAAGAAGCCGAGCAGCGCGGTGTCCACGGCAACCAGCGAAGTCGTGGGGAAGTGTTCGGCGGCAGAGATCGAGCTGAAGAAGCAGCAGGCCATGGAGAGAAGACGCCAGCGTCTGCTCGCCGCCGGGAACCTCCGAGCGCCAACGTGACGGAGAAAAACCTGCTGCCGACTTCCTCCCGATGTTTTCAGCGAGTCTCGTACTCGTGTATGTTCTTGTCCAGTTAAActgtaataatattattttatattatgtttCTAATCCATCAGATCTCTCTgagaagtgctcatattatgcttgttttcaggttcataattgatTGTATTTTAGAGGTTATATcggaataggtttacatggtttaattttcaaaataaaacatttttgttgtactgcacattgctgcagctcctcttttca

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0044427 obsolete chromosomal part cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3019 lncRNA downstream 31027 6136327 ~ 6238233 (-) False G2152
TU3017 lncRNA downstream 31096 6234272 ~ 6238164 (-) True G2152
TU2940 lncRNA downstream 47395 6217152 ~ 6221865 (-) True G2092
TU3029 lncRNA downstream 105648 6163254 ~ 6163612 (-) True G2160
TU3027 lncRNA downstream 109529 6159154 ~ 6159731 (-) True G2158
TU3057 lncRNA upstream 17299 6303723 ~ 6316733 (-) False G2180
TU3065 lncRNA upstream 37285 6323709 ~ 6378977 (-) False G2184
TU3066 lncRNA upstream 37285 6323709 ~ 6371000 (-) False G2184
TU3081 lncRNA upstream 70663 6357087 ~ 6367016 (-) True G2194
TU3083 lncRNA upstream 85893 6372317 ~ 6372937 (-) True G2196
XM_039808460.1 mRNA downstream 52779 6213667 ~ 6216481 (-) True LOC120563932
XM_039808371.1 mRNA downstream 55660 6208778 ~ 6213600 (-) True LOC120563881
XM_039808362.1 mRNA downstream 55662 6208778 ~ 6213598 (-) False LOC120563881
XM_039808141.1 mRNA downstream 62451 6200947 ~ 6206809 (-) True LOC120563747
XM_039808296.1 mRNA downstream 71025 6183835 ~ 6198235 (-) False LOC120563858
XM_039823938.1 mRNA upstream 180715 6467139 ~ 6475893 (-) True LOC120573968
XM_039824290.1 mRNA upstream 190541 6476965 ~ 6482370 (-) True LOC120574130
XM_039824423.1 mRNA upstream 201596 6488020 ~ 6491799 (-) True LOC120574175
XM_039824155.1 mRNA upstream 208146 6494570 ~ 6507444 (-) True LOC120574032
XM_039824067.1 mRNA upstream 208150 6494574 ~ 6504506 (-) False LOC120574032
TU3049 other downstream 2022 6266606 ~ 6267238 (-) True G2177
TU2942 other downstream 62370 6202326 ~ 6206890 (-) False LOC120563747
TU3000 other downstream 157668 6111139 ~ 6111592 (-) True G2146
TU2877 other downstream 769322 5496038 ~ 5499938 (-) False LOC120563672
TU3116 other upstream 235082 6521506 ~ 6534312 (-) True G2219
TU3119 other upstream 235082 6521506 ~ 6534312 (-) False G2219
TU3121 other upstream 245840 6532264 ~ 6534443 (-) False G2219
XR_005640970.1 other upstream 478116 6764540 ~ 6764654 (-) True LOC120569774
XR_005640881.1 other upstream 479422 6765846 ~ 6765960 (-) True LOC120569514

Expression Profile