RNA id: XM_039817034.1


Basic Information

Item Value
RNA id XM_039817034.1
length 2450
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC120569156
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 29962630 ~ 29974420 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTCCTACTGACAGGAACCTCCCACAAAGGTGTGTGTATAAAAAGAGCAATCACTGGTGACTACTTTTATCAAAAGAACAGTTCATCAAAGGAACATTTTGGTCTCATTAACAGGATTCTGCTGCTTTCCAGAGTCAAAATGGTGAATTACGAAGTGACTGTATCCACTGGCAATTTTGCCTTTGCCTCCACGTTTAACAACGTCTTCATTAAGCTGGTAGGAACAGATGGGGAGAGCAAACGCAAGTGGCTCATGGGGTTCAAAGGAGCTTCATCCTTCACCATTGGAGCAGTGTCTAGTTTTACCGTGTCCTGCCCTGGCTCCATTGGAAAGCTGGTCCTGATAGAGCTGGACAAACAGTGTCTCCCACTGTTCCCTGAAGACTCCTGGTTCCCCATCAAGGTGGAAGTGAAATCTCCTGAAGGAGATACCTACAACTTTCCCATCTACCGCTGGATCACTGACAGCAAGGTGTACCGCTTCCGAGAAGGAACAGCTCTGACAGTCTTCGAAGACAACCATCATCTTGGCAGGCACAGTCGGCAGAAGGAACTGGATCAACGAGAGAAGGACTATCGCTGGCATGTGTATGTAGAGGGAATACCCCACTGCATGAAGGCAGAGAACCCTCTTTCTTTGCCTTGTGAAGTCCGCTTCTCCTTTACTAAGACCACAGAGTTTCTCTACACTGCATCCACCGGGCTGACTGAACTGCAACTTAAGGGTCTGGCTAATTGCAAGGAGAAGTGGACAGATATTGATGCTATCAATCGGGTGTTCTGCTGCAAACGGACTGACATATCAGATTATGTCCAGGAACATTGGAAGGAGGACGCTTTTTTTGGCTACCAGTATCTAAATGGTGTCAACCCCATCTTGATCCGACGTTGTTCAGCTCTGCCTGATAACTTTCCTGTCACTGACGACATGGTCTTCCTCCGTGGACAGTGTAACTTGACAAATGAAATGAAGAAAGGCAACATATTCCTGTGTGACTACAAGCGTTTGGATGGAGTGAAAGCAAACACCATCAATGGGAAGAAGCAGTACTTGATGGCTCCACTCGTCCTGCTCCACAAAACACCTGATGATAAACTGATGCCAATTGCTATCCAGCTGAAGCAGACTCCATCAGATGACAACCCCATCTTCTTTCCTACTGATTCTGAGTACGACTGGTTGATGGCCAAGATTTTTGTGAGAAGTGCAGATTTCAATGAGCATCAACTCAATGTTCATCTGCTGCGCACTCATCTGCTGGCTGAAGTGTTTGCAGTGTCACTGCTGCGTAATGTGCCAATGGTGCATCCACTGTACAAGCTCCTCATACCTCACACTCGCTACACTCTGCAGATCAACCACTTAGCTCGACTTGTTTTAATATCTGAGACTGGAGTTTTTACAAAGTTTGCAGCTTCTGGTGGAGAGGGTATGATGACAATCCTGAAGAGATCACTGTCCTCAATGACCTACAGCTCCCTCTGCATACCAGATGACATTGCTGAGCGTGGTGTGGAGGCTGTGCCGAACTTCTACTACATGGATGATGGACTCAAGCTTTGGGATATCATCCAAAGGTTTGTGCAGGGAGTGCTCAGCTTCTACTACAAGAACGACGCTGAGGTCCAGAAAGACTCCGAACTGCAGAAGTGGATTTCAGACATTTTTGAACATGGATTTCTTTCCCAAGCATTCACAGGAATTCCACAGAGCTTTACCACCGTGGCTGAGTTGGTCAAGTTCGTCACCATGGTGATCTTCACTTGCTCAGGACAGCACTCAGCTGTGAATTCTGGACAGTATGACTATGGTGGCTGGATGCCCAACACTCCCATCTCTCTGCAACTTCCTCCACCAACCACAAAGGGAGAAACAAGCGAGGCCACGATGCTGCAGACATTCCCTGACGTCAACACAACAGTTCAGGGAATGTCCACCATGTGGCTACTCAGCAAGCAGTCGTCTGACTTCGTCCCTTTTGGCCAATACCCAGAGGACCATTTCAGTGAGAAGATTCCCAGCAAGCTGATAAAGGATTTTCAAGGGGAGCTTGAAGTGTTAAGTGCGGTCATCAACATCAGAAACAAGAAGCTGGAGGTCCCATACACATACATGGATCCAAAAAAGTTAGAAAACAGCGTGGCCATTTAAATATCAGAAGGTGTGACCTCCTCAGCTGTTGGCCAAATTCAGCTTCACATTAACAAAAGTGAGAAAGGGAAGAACTGCATGTTTCTGTTTTGAACTGATACTATAGTGGAAAGAAATGACTGCATGTGATTTTTGTATGCTgatatgtgtttatgtatacAGTCTGATTGATTAAACTGTGGTGATAAAATGCTGTTTTAAATCATACACATCCTAAATCTTCTTAGTTTATCAATGACTACACAGGGCAtcttattaaaataaattacaaatgaaaaataaaaaatgtgaaatttg

Function

GO: NA

KEGG:

id description
K08021 ALOX12B; arachidonate 12-lipoxygenase (R-type)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11784 lncRNA downstream 342146 29620019 ~ 29620484 (-) True G8707
TU11781 lncRNA downstream 347230 29615125 ~ 29615400 (-) True G8704
TU11770 lncRNA downstream 393649 29564868 ~ 29568981 (-) True G8694
TU11647 lncRNA downstream 591291 29370601 ~ 29371339 (-) True G8610
TU11646 lncRNA downstream 596149 29364466 ~ 29366481 (-) True G8609
TU11879 lncRNA upstream 31974 30006394 ~ 30006912 (-) False G8790
TU11880 lncRNA upstream 31974 30006394 ~ 30007983 (-) True G8790
TU11947 lncRNA upstream 297044 30271464 ~ 30273350 (-) True G8834
TU11960 lncRNA upstream 380018 30354438 ~ 30354652 (-) True G8843
TU12007 lncRNA upstream 475911 30450331 ~ 30450686 (-) True G8880
XM_039800099.1 mRNA downstream 132615 29823819 ~ 29830015 (-) False ints12
XM_039800107.1 mRNA downstream 132624 29823819 ~ 29830006 (-) True ints12
XM_039800116.1 mRNA downstream 132970 29823819 ~ 29829660 (-) False ints12
XM_039797828.1 mRNA downstream 159011 29794781 ~ 29803619 (-) True ppa2
XM_039797840.1 mRNA downstream 224423 29708370 ~ 29738207 (-) True cxxc4
XM_039817038.1 mRNA upstream 53689 30028109 ~ 30043664 (-) True LOC120569234
XM_039817035.1 mRNA upstream 69519 30043939 ~ 30101128 (-) True tbck
XM_039789045.1 mRNA upstream 177724 30152144 ~ 30166195 (-) True dkk2
XM_039788260.1 mRNA upstream 177724 30152144 ~ 30166191 (-) False dkk2
XM_039799495.1 mRNA upstream 232081 30206501 ~ 30251628 (-) True papss1
TU11778 other downstream 369007 29589308 ~ 29593623 (-) True G8701
TU11635 other downstream 622806 29306021 ~ 29339824 (-) False rnf24
TU11633 other downstream 622806 29306048 ~ 29339824 (-) True rnf24
TU10760 other downstream 3383825 26567614 ~ 26578805 (-) False smim14
TU12128 other upstream 996968 30971388 ~ 30974612 (-) True G8975
TU12451 other upstream 1965301 31939721 ~ 31948554 (-) False znf827
XR_005640553.1 other upstream 2247537 32221957 ~ 32226423 (-) True LOC120567365
TU12600 other upstream 2774947 32749367 ~ 32781138 (-) False lrba
TU12680 other upstream 3118040 33092460 ~ 33134920 (-) False G9418

Expression Profile