RNA id: XM_039817181.1


Basic Information

Item Value
RNA id XM_039817181.1
length 2176
RNA type mRNA
GC content 0.63
exon number 12
gene id cdc6
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8079222 ~ 8095263 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATCAGAGCGCAGCAGCGGGAAACGCAGCTGATCCGAAAGGAGGTGAGCGATATTTGGCGCAAGTTTGAGACCAGTGTGCGGCagaagagggaaagagagggaagcAGAGGGCTCCAAGAGAAGATAAAACACTCCACTCTTTACTGACTTCTGAcaacttttaaaaagATTGAACCCAACATGCCGAGCACACGCTCTCATAGTGGCGTCCAGCCCACGCTGGCGTTCCCTCGCCGTAAATCCTGCCGAGTGTCGGCTCGCTCCAAGGCGCCGGCGCCGCGGCTGGAGGAAAAGCCTCTGTCTCCGACCGAGCCCGGACCCCAGCCTCTCGACCCGGCCCTGACCCGGATCGGACCGCTGTCTCCGAGGCGTCTCGCCGAGCAGCCCGCCCTGCTCTCCCCGAGAAGAGCGCTCGCCCGCCCGTCTCCCCTCTCGCCCAGACGCCCCTCAGCCCAGCCGGCGTCCCCCGGCCTCCAGACGCGACTTCCCCTCAGCCCCCGCAAACGCACCGGTGACGACAACGACTGTAACCTGCTGGGCTCTCCGCCCAAACAGAGCAAGCCGGCCGCCGCGGCGCCGTCTCCCAGGAAGCTCGGCTTCGACGAGAACTCGCCGCTCTCGGTCCGGCGACGGCTGGTCCCGCCCTCGTCGCCCAGGCAACCGCTCTCTCCCTCCGCCGCGCCGTCCCCGAGACGCCAGGCACGCCAAAACTCAGAGGGGAAGTCGCCCGCTGACAAGTCGAGGTTTCTGAGCGTGAAGCGGGCGCTGCACACGGCCGTCCCCGAGCGGCTGCTGTCCCGGGACACGGAGCGGGCCGCCATCCGCTCCTTCCTGGAGGAGAAGGCCCTGCAGCGGCTGCCCGGCAGCCTGTACATCTCCGGGGCTCCGGGCACCGGCAAGACGGCCTGCCTCAACTGTGTGCTGCAGGACATGAAGGCGGCGCTGGCGCCGGTCCAGACCGTGGTGGTGAACTGCATGAGTCTGCGGAGCTCCCACGCCATCTTCCCGCTGCTGGCCGACAAACTGCGAGCGCCCGGCGGACAGAGCGGGCTGCAGAGGTTCCTCACGGCCCCGGGGCCCGCTGTGCTGCTGGTTCTGGACGAGATGGACCAGCTGGACAGTAAAGCTCAGGACGTCCTGTACACCATCTTCGAGTGGCCGTACCTGCCAGAGTCTCGCCTCTGCCTCGTCGggATCGCCAACGCTCTGGATCTGACGGACCGCATCCTGCCGCGGCTGCAGGCGCGCCCCCACTGCCGCCCGCTGCTGCTCCACTTCCCCCCGTACAGCCGCCAGGAGCTCAGCGCCATCGTGCAGGACCGACTCTCCCAGGCGTCGGCCGAGGGCCTCCTGGACGCCTCGGCGGTGCAGTTCTGTGCCAGGAAAGTGTCGGCGGTGTCGGGAGACGCCAGGAAGGCCCTGGACATCTGCAGgaGAGCCGTCGAGGTCGTGGAGTCCGACGACAGGAAGAAGGCGTCGGACCCAAACGCCGAATCTAAAGCGTCGCGGGTCGGCCTCCCCCAGGTGGCGCGGGTCCTGTCGGAGGTCTACGGCGACCGCATGGCGTCCCAGTGCGGCGCCGGCTCGGACGGAGAGAGCTTCCCCCTGCAGCAGAAGCTGCTGGtctgctgcctgctgctgctcacACGCAACGGGAAGAGCAGAGAGATCGTCCTCGGAAAGctCCACGAGGTGTACAGCCGCCTGTGCGCCCAGCGACAGGTGTCTGCCGTCGGTCAGGGCGAGTGCCTGTCTCTCTGCGGTCTGCTGGAGAGCCGAGGGATCTTCTCTCTGAAGAAGGCCAAGGAGGCTCGCCTCACCAAGgtGTTTCTGAAGATCGAGGAGAAAGATGTCGAGAACGCTCTGAAGGACCGAACGCTGCTGGGGAGCATCCTCGCTGCAGGACTCCCCTCCTGATctcacctttttttgttttttatggactaagacattttttcaacagttgaattttttttaattctcgtTTTTGCTGAGAACTTgtacagtgtgtttttttttgttttctctctcctaCTGATGTCGATGCTCAGTTCTCGAGTTGTTGAAGAATGTCGTTGAGTCACTGATGAATTTACAGCGTTTTGTTTCAGTTTGGATTTGAAACGTTTCCACGTTTTATGCTGTAAATAAACATGTACAGACATTTAAAATCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K02213 CDC6; cell division control protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3888 lncRNA downstream 29752 8044532 ~ 8049470 (-) True G2799
TU3851 lncRNA downstream 110793 7965872 ~ 7968429 (-) True G2767
TU3850 lncRNA downstream 113957 7963266 ~ 7965265 (-) True G2766
TU3863 lncRNA downstream 140285 7935940 ~ 7938937 (-) False capn9
TU3843 lncRNA downstream 218783 7813793 ~ 7860439 (-) True G2759
TU3901 lncRNA upstream 8810 8104073 ~ 8180677 (-) False G2809
TU3958 lncRNA upstream 39415 8134678 ~ 8137391 (-) True G2828
TU3959 lncRNA upstream 43581 8138844 ~ 8143373 (-) True G2829
TU3960 lncRNA upstream 44153 8139416 ~ 8141214 (-) False G2829
TU3976 lncRNA upstream 117654 8212917 ~ 8225961 (-) True G2842
XM_039804856.1 mRNA downstream 99765 7969350 ~ 7979457 (-) True taf5l
XM_039816074.1 mRNA downstream 121601 7935940 ~ 7957621 (-) True capn9
XM_039804049.1 mRNA downstream 147818 7915198 ~ 7931404 (-) False ltv1
XM_039804042.1 mRNA downstream 147819 7915198 ~ 7931403 (-) True ltv1
XM_039804037.1 mRNA downstream 183483 7890707 ~ 7895739 (-) True LOC120561073
XM_039800144.1 mRNA upstream 69697 8164960 ~ 8293126 (-) False LOC120558849
XM_039800153.1 mRNA upstream 69697 8164960 ~ 8293096 (-) True LOC120558849
XM_039800161.1 mRNA upstream 153031 8248294 ~ 8293125 (-) False LOC120558849
XM_039800239.1 mRNA upstream 203318 8298581 ~ 8332326 (-) True LOC120558897
XM_039800174.1 mRNA upstream 209445 8304708 ~ 8316194 (-) True LOC120558865
TU3830 other downstream 315274 7739824 ~ 7763948 (-) True G2752
XR_005640903.1 other downstream 506765 7572321 ~ 7572457 (-) True LOC120569585
XR_005640913.1 other downstream 521324 7557767 ~ 7557898 (-) True LOC120569612
XR_005640861.1 other downstream 706664 7331956 ~ 7372558 (-) True LOC120569296
TU3357 other downstream 839094 7225340 ~ 7240128 (-) True commd1
TU3971 other upstream 111989 8207252 ~ 8209535 (-) False G2840
TU3972 other upstream 111989 8207252 ~ 8209535 (-) False G2840
TU3973 other upstream 111989 8207252 ~ 8209535 (-) True G2840
TU4012 other upstream 388449 8483712 ~ 8501141 (-) False wipf2a
TU4151 other upstream 663386 8758649 ~ 8767973 (-) True G2938

Expression Profile