RNA id: XM_039817302.1



Basic Information


Item Value
RNA id XM_039817302.1
length 4298
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120569430
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8801253 ~ 8817185 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTGCTGAAACCCAGGTGAGCTGAGAGGGGCGGCGCTTGGCACAATATGTGAGCTGTCAGTGGAACCAACAGGGCAGcTGTTTCTTTAAGGTGCAGGGTGCTGCACatgatttcatttcatttaccaGTCATGAAGTAAAGGAGAGGCCTGTTGCGCATAGAGACTCTAGAGGGGATCTGGCACCTAATGGAGTCCAATCTGTCCTGCCTGTCTTCACTGAAAGAAGAAGACAATGTGGTCTACGTCCAGCCACATTACAAAGAATCCTACCGCCTGGCCATTTATGCCCTCCTCTGTGGAGGCCAAGAGGCCTACGAGGAGTTCCTCCGAGCCGAGCAGATAAACCACTTCCTATCAGAGAAGGAGATCCTGTTCATTTTGGAAAATGCAGAGTTACCAGCGGTGGAGGAGGAAGACACCTCTGAGGGGAAACGGGCCACAGACGAGGCCAGACCCTCCACCTACTTCCCAACCGAGTCGGACGAGGAGGTGCCCAACCTGGACCTGGGCTGGCCGGAGGTGTCTCTGGAGGACATGGACACCAACATCAGCCTGCTGTtccacccacccagacaaaacACTCCGACCATTAAAGAAGTGGTTCGCAAGCAGATACAGGAGGCGAGGAAGGTTATTGCCATAGCGATGGACGTGTTCACTGACGTCGATATTTTCAAAGAGATCATCACTGCCACGTTGAGGGGAGTGGTAGTCTACATCCTCCTGGATGAAGCCCAGTTCAAGAGTTTCCTCACCATGTCACACAGGGTGGGCGTCAACATTCAAGACTTCAAGAACCTTCGTGTTCGGACGGTTCAGGGTCAGCAGTATCAGTGTCAGTCCGGGGTGAAGTTCCATGGAGATTTGGAGCAAAGATTCCTTATGGTGGACTGCAGAACAGTGATGTATGGAACATACAGctaCACATGGTCGTTTGAGAAGATCAACCTCAGCATGGTCCTGGTGATCACAGGTCAGCTGGTTGGCTCTTATGACGAGGAGTTTCGAAGACTGTACGCTCGCTCCTCACTTCCTGTAGTTCTGTCCAGGGAGAAGTCATCTGTCCTGCACCTAAGAGACACTGTGGGCCTGCAGAGCCCAAATTCCAGCCAGCTTTCCCTCCACCAAATTCACACAAGACCCAAAGTAATGCACGGCATGAGGAGTGCTCAGGATGACAGGCTTAATAATGCCGCCATGATGACCAGGGGCCTGAGCGTGCAGGAGAGACTGCATCAATCTCACTGTTTCGACATGGGAAATCTGGTGCGGGGACACAGCTATGGCGGAGAACTGCAGAATATAAACTCCATGACTCGGTTAAGGATGGGGACCAAGAACATCGGAGTCCCTGTTGCTCCCGAGAAGACAGCACCTAACGTGAGGGGGGGCGGCGACTCGCTGCTAACAAACAGGATGTCTCAGCAACACATTAGGCACCAGACTCGCTATGGAGCGGACCAGAATCTGATACCGTTCAACTCTGAAACATCCCTCAACAGGTGGAAGATAGACACATACTTTAATGACAGCAACGTGCCTCTAGATGCATCATACGATGCATTATCCCCAATGCCATCTCCGTATAGTAGCCACACAGGCTTAAACGAGCAACAGTCACAGCTGATTCACAGCAGGTCGAGGGACATAAAGTCCAGGATGGAGGAATTGAGGCAGAAGAGGCTCAGTCTGCAGGAGTACAGCAATCTCAGGCAGAGCCAAGAGTCATTGAGGTCTATGTATCCGACTGTGGAAAGACCTAAATTTGTGTCCTTATTAAGAGGTCTGGACATGCGGCAGAGTGTGGCAGAATTAGAGCCAAATACAGAAAAAGGTTGCAGCCTGGAACCAGCCAATCCCAGAGACAGTGAGCCAAATAAAGGAGGCAACAAAAGAGAGCAAACTTTCCCTGATGGCCACCACTCTGCCTCTCACTATGACGTCACAATGGTTCAAGATCGAAAGAAAACGCAGACGTACGACTGGCACGAGCCTCTTTCCAGGACAACCTCAGCTGCCGATTTAGATATGAAACTAAACGATCCATCGCTCAAGCTCTCTCATTTGCATCCCAGCGGTCTCCAACACCCAAGAGCGATGGAGTCTTTGACTGAGATCCCTGAAGAGAAAGAGGGTTCACGTGTCAACAGTTCGGACTCAGCTGCATTTAAAGATGAAAATGAGGAGATTCGCAAAGACAAGAAAGCTGTTCCAAAGGAGAACACTGTGAAATCTAGCGTACCTGCTGAATCACAGCGCCAGGATCAAGCCAAAGGAAGACATGGTTCTGTAGGTAAGGCAGCCAACAGCTCAGGCTCATCTGCTCCAAGAGAAGGAATGAAATCAATATCCAATGAGATACAAACTGCCCCAAAAATCTTAAACACTTCTACAGGACCTCAGCATGCCGTCGAAGCTAAGAGTAGTCACATGGAAAAAAAGCACACGCAGCGAAAGGAACCACCCCTTCAGAGGAAGAATTCCTTGAGAATGAAAGTATATTCGATGCTTTCCCCAGACGAAAACAAAGCATCCAAAAAAGACGAGAAGTCACTCCAAAGAAAGGCCTCACTGAGATCGTCGCAGAATCACTCAGGATCAAAACAACCACTCAGAGCAGACCATTCACAGGCACCTGCGCCAGAGCAAACAACAAAGAAAGGTCAATCGCCGAGCATCTCCAGGTCGCAGAGCTCTCTCGGTAGTCAACCGGAGACAGAGAAGCATAAATCTCCATTCCAAAGACTGTCTCCTCAGCGTTCAAGCAAAAAAAAGCCCAATCCAGCAGGAGAGCCGGACCGAGGCGCAAGGAACACTCTGGACGACGAGGCAGCGACTCTCTATCACACCAGAAGAGATAAAGTCTACAGTCGATTTGAATATTATCTTAGCGCTGACAGTATTCCTCAGGATAAATCAATGACAAGGGCAAGCATGTTGCCCTCCGAGAAAGACAGAGGGTCTTCCCCGAACAATCATGACTCTGGTTATCCAATGTATGAGACGCAAAGTGGCACTGACAACAAACTGGGAAGATTCATGCAGCGAGTAGGAAATCTAATAGGAAAGAACAAGTAGAGTTGTAGGAAAAGAGGAAGGCCACCAAGTGCTCAAGAATGAAGGCACTAATCCATGATCtgtttattgattgattttggttcccacacagagacaaagatgcTGTATGTGGTCATCTCTGCAGTATGCTACGTTTTTCTTTTGATATGTTTGATAATGTAGCTATGATCTTATCAGGGAGGAAGCTGAGTCGATATGATAATACCGGTAAGTAAAGGTGTTTACAGATGAAGTTATAGCAGGGTGAATATGACAGTAGCGCTTGCAGACACAGAAAAATGTGTTATCAAGTGAGTTGAATTGTGTGAAAAGACATCTGTCTTTATATTGAAAGTGTTTGTTCTTTTTGAAAGTAACAATTACAATGCTTTTTAGCTtgccatgaaaagaccaaaaccaacagtgAATGTAGGGGGACTGAACATCCAGAATAATTCGGGACAGTAAGGAATTACAAGCAGTTGTCCAGAGTCCTGTCCTGTTCGTCCCAAAAATAAGGCTAAACCTGAGTTTTGATTAGTTATAGCCTAATAAAACATGAGATACTGattattgtgattatttttggtGTTGCCCACAGATGgctgttatagttttttttatttttttttataattatttttattatttccatCAAGAAGCAATACATATATCAATATACTGTGTAATCACACTCCAAACAGGATACATTTCCGTTGGTATCCGTATTCTTCTACTCCACATTTTTgacacacaaacccaaacacacacatttttacacaaatccacccacccccccgcccccctccccctcccccacacacacacacacatccacacatccACTTGGTTTCCAGCTCTCAGTCACCATACCTAGTTCTTATTTCTTAGCCATTAAATTTACAACGCTTCATATATGTCCTGCCACACCTTGTTGAATTGTTGCCTTTTGTTCCGATCTTCGAACATTGATTTTTCTATACTTAAATAGTATTTCATTAGTCCTTTTCATTGTTGTAACGATGGGGCCTCTGTATCCATCCAATGGGGTATTTTAgctgttatagtttttttttgccgTGTACAGTAGTCCCGCGAATTGATAAACAAATAGCTGTGATGAAAAAATTCCGAAGGGAAAATAAACCATCCATCACTGGCACGGAGCCTGGTGTCCTGGTGAACATCCagccaaaaagaagaaaaaaaaatgtttcagcaGGTACCGGGAGGAGTGGGGA

Function


GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4174 lncRNA downstream 524 8800400 ~ 8800729 (-) True G2961
TU4173 lncRNA downstream 1120 8799491 ~ 8800133 (-) True G2960
TU4150 lncRNA downstream 43153 8756366 ~ 8758100 (-) True G2937
TU4072 lncRNA downstream 156062 8644195 ~ 8645191 (-) True G2894
TU4069 lncRNA downstream 158771 8641303 ~ 8642482 (-) True G2892
XR_005639204.1 lncRNA upstream 73661 8890846 ~ 8892363 (-) True LOC120558812
XR_005639319.1 lncRNA upstream 154489 8971674 ~ 8986610 (-) True LOC120559564
XR_005639324.1 lncRNA upstream 157419 8974604 ~ 8980978 (-) True LOC120559581
TU4262 lncRNA upstream 209822 9027007 ~ 9027944 (-) True G3036
TU4282 lncRNA upstream 304528 9121713 ~ 9124011 (-) True G3052
XM_039807029.1 mRNA downstream 14587 8776022 ~ 8786666 (-) True ptp4a1
XM_039811772.1 mRNA downstream 61965 8732068 ~ 8739288 (-) False si:dkey-23f9.4
XM_039811764.1 mRNA downstream 61965 8732068 ~ 8739288 (-) True si:dkey-23f9.4
XM_039803243.1 mRNA downstream 194480 8575233 ~ 8606773 (-) True gpr179
XM_039811044.1 mRNA downstream 238955 8519935 ~ 8562298 (-) True npepps
XM_039794410.1 mRNA upstream 1102 8818287 ~ 8857778 (-) False myom2a
XM_039794429.1 mRNA upstream 1102 8818287 ~ 8857705 (-) False myom2a
XM_039794401.1 mRNA upstream 1102 8818287 ~ 8857705 (-) False myom2a
XM_039794390.1 mRNA upstream 1102 8818287 ~ 8857705 (-) False myom2a
XM_039794380.1 mRNA upstream 1102 8818287 ~ 8857705 (-) True myom2a
TU4151 other downstream 33280 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 300112 8483712 ~ 8501141 (-) False wipf2a
TU3971 other downstream 591718 8207252 ~ 8209535 (-) False G2840
TU4231 other upstream 88487 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 708358 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 732796 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 1209085 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 2082373 10899558 ~ 10905235 (-) True G3586

Expression Profile