RNA id: XM_039817320.1


Basic Information

Item Value
RNA id XM_039817320.1
length 2223
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC120569451
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17286966 ~ 17291473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccTGCCCACCACCTGCAGGAGTCTCCACTACATCAGCTGCACCTACACCGCCTACATCTAGCACTCTAGCGATGGAGGAAGACAAGGAGTTGGAGAGGGGGATGCTGAATCTGTCTCCCTGTAAATTTGCCACTGAACTAAggccagcagcagcagtctccAGAGCCCTGGCTGTGTCTCCACCAACAGGTTTTTCTCCAGCACCGTCTGTCCCTTTAGATGTCCCACACCAGCCTGCAGCCTCTGTCCCTGGCTATGCTCAGGATGTAGCGCAGTGGAACTGCTCCCACCAGCAGAAAATTTGGATGAAGACTGAGCTGGAGGCGTTGGGTCTGTGGCCAGGGTCACGTCCTGTTCGTCATCCTATGAACATGCTGTCACTGTGGCGTAATCCACCTCAGCCTGAGCTCATAGACTCAATCTCTGAGCTGCCGTCACCTAAATACTGTCAGCTTCATCCTTTTTTCATTTGGAAGCCGGAGCACACAATCATGGAGAGGGTAAGGAACAATTACATCTTGCCCTGCCTTCATGATTGTCCCAACCCTCAGGTAGCTTCTTCCGGCGTTGGAAGGCCAAGGGTTATTATTGGCACCAGCGGCCAGTACTATATTTTAGCCTCTCGGCTCACCTGCAAGGCCTGTAGGAAGTACTGGCATGCTGACAAGACCCAGTGGCTGGAGAAGCTACCGGAGCACTTCAGCAACATTGTTCCGGCTTTCCTTACCCACAAAAAGGCCATCTGCAAATCTGTAATGGATGAGATGAGGCGCAGCGGCAGATCACCGGAGGACATGGCTAAGCAGCTGACGGAGGCACTCCACCTTAAATATGAGAGAGCTCACCTGGCCTACCTGCTCAGTGTACAGAACGTCAGGGATGCTGAGGCAGGAGTTTACGGCCAGAGAACCATCACTGGGCTtctcagacaggcagacactCAGGCTCCATTCGGTGGATACTCCGTTGCTGACGGCTGGTGTGGAGTGTCTATTTCTTCTCACTACCTGGTCGACTGCCTGGTCCGTGAGTTTCAACGGCAGGAGCAGCTCCTCACTCTCTTGCTACAGGGAACCTTTGGACAAGTACTCAGgGACTGCTGTGCTGCCTTCGAGGTCCTGGACCCTGGTCATCAGGAGCACCTGCTGTGGGACTGCTGGAGGACGTCAGAGGCCACCGTGGCGAAGGCGACCTCTGGCAACCTGGCCAACAACAGTGCCTCGAGGAGCAAGTTTAACAAAGACATTGCCATCGAGTTAGACTTGTTTCACTGCATGAGGCGCTTTACCAGGGAGTGTGTGTCTGAACATCAGCCTCTGTTCAGCTCCTTCTGCTAGTTCCTCTGCAGCATTTGTTGTGGTGGACCAGAGGGATCTACAAAGGCTCACAGAGGCATACACCTTCTGTGGAATCTCTCCTGCAAATCCGACAAAGCAGCACATAAGAGAGCACTGCAGGACAAAGGTGCCACAGCCGAGGGAGCTGCTGCAGAGGGTTGAAGATATGTTGCACCACTTCTACCTGGCAAAGGACGCCAATGATGTGCCCCTGTTTAAGGCCTCCATGCTGAAGTTGTGGAGGATCCAACGCGTCCACATCCTGAGAGGCTGCCTGAGCGACCCTGACGTGGGGGAGGGAATTCTGTACAGGTATGGTGGCACCTCAACTACAACAAGGGTGCAGGAGCCGCTGTACCTGTTACGATTCCAGTGAGAGGCACCTCTCAGCAGGAGGGCTTCCACTAAGCCCAGTTGGTGACAGGCAACCAGGTGTCCTGTGAACTTTTCCAGGCCCAGGCAATGACTGGAGTGGTGCGGTGGAACTTCCAGAGGCTGGTGGACCTGAAACAGCCTGGAGCTGCCAGCTGTGTTCGACTCCCTGTTAATTTCAGGACTGAACACAGCCTCTGTCAAGGTGACAGGCCAAGCTAAATATCCCAGGCTGCAAAATACAAACAGGGACACAGGGGAGAGATTTGGACTGCAGTTTGTGGAGCCAGGTTGTCGTCCTGTTGTGTTGAACTGGGACAAGCACAAGGTACAGCCCAACATCTCAGCTGCTGTAGCCATGGAGACAGAGGATCACTGCCCTACTGCTATGGTGGGCACAGACTCTCAGGAGACCAGTGATGAGCCAGTTGGAGCGGTGCCCATCCTATCTTTCCTGCAGGGCTCTGAAACCGTTTCCCAATCCCAGCAATCCCAGCACTGTGTTTAAGCtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7300 lncRNA downstream 35502 17248985 ~ 17251464 (-) True G5393
TU7264 lncRNA downstream 100584 17182647 ~ 17186382 (-) True G5376
TU7261 lncRNA downstream 101163 17178399 ~ 17185803 (-) True G5375
TU7243 lncRNA downstream 164748 17114975 ~ 17122218 (-) True G5361
TU7110 lncRNA downstream 205569 17079161 ~ 17081397 (-) True G5270
TU7332 lncRNA upstream 20097 17311570 ~ 17311817 (-) True G5418
TU7313 lncRNA upstream 25803 17317276 ~ 17317820 (-) True G5402
TU7349 lncRNA upstream 40284 17331757 ~ 17333610 (-) True G5430
TU7366 lncRNA upstream 57402 17348875 ~ 17350975 (-) True G5435
TU7384 lncRNA upstream 108432 17399905 ~ 17448034 (-) True G5449
XM_039801873.1 mRNA downstream 30519 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA downstream 30519 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA downstream 30682 17246549 ~ 17256284 (-) False LOC120559819
XM_039801867.1 mRNA downstream 30682 17246549 ~ 17256284 (-) False LOC120559819
XM_039801881.1 mRNA downstream 30682 17246549 ~ 17256284 (-) False LOC120559819
XM_039789756.1 mRNA upstream 43464 17334937 ~ 17338618 (-) False si:ch211-196h16.12
XM_039789933.1 mRNA upstream 43464 17334937 ~ 17338617 (-) False si:ch211-196h16.12
XM_039789851.1 mRNA upstream 43464 17334937 ~ 17338553 (-) True si:ch211-196h16.12
XM_039797436.1 mRNA upstream 78031 17369504 ~ 17385031 (-) True rfx1b
XM_039816967.1 mRNA upstream 120580 17412053 ~ 17421098 (-) True LOC120569099
TU6856 other downstream 939044 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1857410 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2382757 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2567864 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3719700 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 419173 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 539219 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 552463 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 588395 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1593495 18884968 ~ 18890220 (-) True G5930

Expression Profile