RNA id: XM_039822887.1


Basic Information

Item Value
RNA id XM_039822887.1
length 3108
RNA type mRNA
GC content 0.59
exon number 10
gene id zgc:66455
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7140734 ~ 7155323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAGCTGCTAACACAGGAAAGGAAAACAGCAGTTTAACTGAAGCTGTGAGGCTCAACTTGACTTCATTGTTTCATACATTTAAAGTAGTTTAACAGGCAAAGTTTTGGTGAAAAAATGCCACCGAAGAACATATTTAGCTTTAAAAGCATGCTGCTCATATTTGGTATATTGTGGAAACTGAGTGACGCACAGGTGAACAGAGAAGAAGCCAACCAGCCTCCAGGTGAGACTCAACCTGAAgATGGAACCAGAGGTGACGGCAGTGCCTTCTACGCCCTGCGGAGCTGCCAGCAGCTGCTGCAGAGCGACGCCGGCGAGTTCTTCTCCCCGGATTACCTGTGCTCCAACCCGCCGCTGTGGTGCAACTGGACCATCCAGATGGACCCGGGAAAGAGGATCCTCCTCCAACTGGAGGACCAGACCCCCGACGACGCCTGCCACCTCAAAGAAGACCAGGTCTACTTGGACGAGCCCATCGGACTCTTAAAGGCTCACAAAGTCCTGCAGAAGTGCTGGCGGGAGGTCAAGTACACGTCCTCGTCCAACACTGTGTATGTGGTGCAGCTGATCGGCGGCTGGCCCAGCTCGCCCTACAGGGGCTTCCACGGCCGCTACCAGGCCTTTGGACCCCCGGTGGTTTACAACCCGCAGGAGGGATTCCCAAACAGGGAGTCAGAACCATCTCCTGGAATCCCAGACTTTAGTGAACTTAAGAACGGTGAACAGCTGGAGTCAGAGCATCCGTCGCCAGCTAGTTCTGATCTTACATATGATTATTTTAATCCATCTTCAGACGGGACGGAACCCGAGGAGGCCGCGGACACTGAGGTGGATGACCTTCCAGTCTCGGCATCCACACAGGGGACCTCTCGATCGGGAAGAGGTGCCACTAAAACCTCTTTCCGCCAGTCCGACTCAGCCGTCCCTCCTGCCTCTTCCCAGCAGCAACGCGGCGGTCAGAGCCAGGAGCCGCTCAGACCCGCCACAGGCAGCCCGGCTGCTAATGTGGAGGAATCTTCGTATCTAGAGGAAGCTTTGACGCATCCAGAGAGAGCCTCGTCGGATCCAGAGGAAGCCTCGTCGGATCCAGAGATGGCCTCGTCGGATCCAGAGATGGCCTCGTCGGATCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGCTCCAGAGGAAGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGATCCAGAGGGAGCCTCGTCGGCTCCAGAGATGGCCTCGTCGGATCCAGAGGGAGCCTCGTCGGCTCCAGAGACGGCCTCGTCGGCTCCAGAGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGAGGAAGCCTCGTCGGATCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGCTCCAGCGACGGCCTCGTCGGATCCAGAGGAGGCCTCGTCGGATCCAGAGGAGGCCTCGTCGGATCCAGAGGAGGCCTCGTCGGATACAGAGGAGGCCTCGTCGGATACAGAGGAGGCCTCGTCGGTTACAGAGGAGGCCTCGCCGGATCCAGAGACTGCCTCGCCGGATCCAAAAGAAGCAGCAAGTCCAGAGGAAGAGAGGCTGTTGGAGGAAGAAAGGCTTTTGGAGGAGGAAATGTCAAACTggcttccttctctctctgaagcagcagaaccAGGGGAGACTGAGCCGACTCTTCCTCAGCCCAACGTGGTGGAGCAGCTGTCGGACCACCGAGGAAACCTCCACGTCAGAAATCACTCTGAAGATCCACATCTTCCTGGCGATCACCTGTTTGAAGTGACGGTTGAAGTGAAATTCATCCCGGATGTAAAGGAGTCCTGGGACAACGTGTTCCTGTCACTGCTGCCGTCGGTAAAAGAGCTGATCAGCAAGCAGCTGAAGCCTCTGCATATGCCGCTGTCCATGaagactaaaagaaaaaaaagactgAGTGCAGGAGGGCTGTACATCATCTGGCTGCAGATTGGACAGGGGCCGGAGGGTCTGCAGGTCCACCGGACCGTCCACTCCAACCTGCACGGTCTCCCTGCCACGTCTGTCGGCGTTAGCCAATGGGAAGCTGTGATCTCCTCGGTGTCGATTGCAGatgtAAACGAGTGCGGGACCCAGATGGTGCTGTGTGACGTTAACGCAGACTGTGTGAACCAGTTCGGTTCGTACTCGTGCCACTGCAGGCCGAGCTTCCGGGACGAGTCCCGCCTGGGGTCGGGAGGGACTGCCTGTGTTGATGAGAAGCCTGCagGTTGCAGCTCGGACCTGTCGCCTGAGACGAAGGGCGTCTACGGGCTTTTCTTCCTGCTCAGCTCGCTCATCCTTCTGCTGCTGGCGGCGGCCGGCCTGCTGTACCACCGCCACCGCCGCGGGGCCTTCCTGGTCCGGTGCCACAGCAGCAGcggaggcagcagcagcatcatcgTTCCTCCTGACctcaacaacaaccaccaccaccatcatcaccGCCATCGCTGCTATCACCATGACGACACCTACTCAAGCACCCCGGACTCTGACCTGCCCCCGCCCCCTCCGCCCGTCCGGAGCTTCAGGGAGGGCTGGCCCCCGGCGAAGGAGCGCTGGCCCCCGGCGAAGGAGCACAGCCCGGCCCTGGACCTGCAGCTGCTGCGCATCAGCCAGCTGCTGCGGCCCGACGCCTGCACGGAGCCGCAGGAGGGCGGGAAGAAGTGAAACAGATAACGGAGAATCTGAACTCGTTAAAAAACTcctttttcatttagtttttttatttgtcagatTATCAGTTTGAAATAAAATCTCAATACAACAGCA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3308 lncRNA downstream 13325 7126802 ~ 7127409 (-) True G2367
TU3303 lncRNA downstream 54449 7085358 ~ 7086285 (-) True G2362
TU3300 lncRNA downstream 59266 7081247 ~ 7081468 (-) True G2360
TU3285 lncRNA downstream 137727 6999171 ~ 7003007 (-) True LOC120571633
TU3278 lncRNA downstream 163097 6977280 ~ 6977637 (-) False G2342
TU3362 lncRNA upstream 11109 7166432 ~ 7167827 (-) True G2392
TU3358 lncRNA upstream 70017 7225340 ~ 7240128 (-) False commd1
XR_005640135.1 lncRNA upstream 108368 7263691 ~ 7268389 (-) True LOC120564702
XR_005640658.1 lncRNA upstream 116496 7271819 ~ 7276543 (-) True LOC120568064
XR_005640671.1 lncRNA upstream 278593 7433916 ~ 7441067 (-) True LOC120568185
XM_039820724.1 mRNA downstream 123075 7002504 ~ 7017659 (-) False LOC120571633
XM_039810502.1 mRNA downstream 201747 6889288 ~ 6938987 (-) True LOC120565104
XM_039803634.1 mRNA downstream 264497 6808752 ~ 6876237 (-) False vps54
XM_039811084.1 mRNA upstream 3547 7158870 ~ 7223862 (-) False b3gnt2a
XM_039811094.1 mRNA upstream 3547 7158870 ~ 7223862 (-) True b3gnt2a
XM_039811112.1 mRNA upstream 3547 7158870 ~ 7223861 (-) False b3gnt2a
XM_039811103.1 mRNA upstream 3547 7158870 ~ 7223861 (-) False b3gnt2a
XM_039811072.1 mRNA upstream 3547 7158870 ~ 7164539 (-) False b3gnt2a
unassigned_transcript_11 other downstream 97716 7042947 ~ 7043018 (-) True trnae-uuc_9
unassigned_transcript_10 other downstream 98566 7042097 ~ 7042168 (-) True trnae-uuc_8
unassigned_transcript_9 other downstream 101181 7039482 ~ 7039553 (-) True trnae-uuc_7
unassigned_transcript_8 other downstream 102151 7038512 ~ 7038583 (-) True trnae-uuc_6
unassigned_transcript_7 other downstream 103778 7036885 ~ 7036956 (-) True trnae-uuc_5
TU3357 other upstream 70017 7225340 ~ 7240128 (-) True commd1
XR_005640861.1 other upstream 176633 7331956 ~ 7372558 (-) True LOC120569296
XR_005640913.1 other upstream 402444 7557767 ~ 7557898 (-) True LOC120569612
XR_005640903.1 other upstream 416998 7572321 ~ 7572457 (-) True LOC120569585
TU3830 other upstream 584501 7739824 ~ 7763948 (-) True G2752

Expression Profile