RNA id: XM_039825483.1


Basic Information

Item Value
RNA id XM_039825483.1
length 1778
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120574931
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19645501 ~ 19647903 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCGGAGACGCATATTGGACACTGTACACCTCAGCGACTTCATTCCTCTGAACGGCTACACGGAGGTGCATGGCCCCATCCCCTTGTGTCATGATGAATCCTGTGCAGGGGTCGCCGTCCCAAGATGCCAAACTGCTTCATCAGAAAGAGGAGACGGATACGGAGGGCGAGGATCTTCAGCCTAAAGACATGACCACCGAGAAAGGATACAAACGCTGCCTCCCGTTTAGCGTCGAGTCCTTGATTTCCAAAAAAACCACCTGTCGGACTTCTTATCCCCCCACAGATTTAACTCTGGCCCTGCCTAAGCCCGTGGCCGGGCAAGGCTTGCAGTTCTCTCCAAGGACTCTTTACGCGGAGAGCAAGGTTTCCCCGGAGAGCTCGCAGGGAGTTTCCAGTAGTCCCAGCGAGGACAGTCCGCAGTTTTGTGAGAAAGATCAGAGCACTTGGTTCCAGACGTCCTCCCTTTCTACTCCGCCTCGGAGCTCAAGTCCAACTCCGTGTACTTTAaggaaacacaaaaacaacaggaAACCTCGCACGCCCTTCACTACCTCCCAGCTGCTGGCGCTGGAGCGCAAGTTTCGCCAGAAGCAGTACCTCTCCATCGCCGAGAGAGCCGAGTTCTCCAACTCTCTCAACCTGACGGAGACTCAGGTCAAAATATGGTTTCAGAACAGGAGGGCCAAAGCCAAGAGACTGCAGGAGGCCGAGCTGGAAAAGTATAAACTGGCCTCCAAGCCCATCCTGCCCGCCTTCGCGCTGCCGCTCCCCCTCGGAGCGCACATGGGGTCTCCAACGTGGGGTCCGTCAAACGCCTTCCCTAGGCACGGTCTGCCGGTCCCAGGACTGTTCAGCGGACCCGTCACTTATGGGATGTACTATTTGTCTTAGTAGTACTGCGTGTGTACGTGTGATTTTAAGAGAACATATGTCTTATGTCATGGTTGCAATACACTTATGAACGAGGATGATGCGTTTTCTACACATCGGGCACATTTTTTTGGTATTTGGAGTTTAGAGAAATTTTCTAACCtccagaataaaaaaacaaacaagtaatTTCGGATCACATTTTGATATATAATTGTGTGCGTAATGGACTGAGTGAGTTCACATCGCTCTCCTCATTTTAAGACTAATAAGTAAGAAGGTCTGTGGATTCAGGCCTAATTTTGTGAGGCAATAGGGCCTACTCCAAAAGTCAGGTTTTTAAACAGCATGTCTTAAATATCTCATTCCAATTCATCCACCGTGCTCCGCAGTAGTTTGTGAAAATGTGTCCCGACATGAAGGCTAAAGCGGAGGTTTAAAAGCAACAGAAAAGTACTTAAACGGTGTCAGTGCCTTAAGACCAGTGTATCACTTGAAGTATTTCTCCTCATTCAGCATTGACTGTTTCTGGTAAAACTGCAGTTTACCGGAGTTGCTGTTTGAATGTTTGTATTTCCTTACAGCATTTCCTGTCACGATTTCtacattttgtaaacattgagcaaaattatattttagaaaaacacGTGTATTAGATATTTTTTTACCCTCACAGCGTGGCCTTTATGGGAGTGATAATAGATTTTCTTTGAGGATTTTTGctgtaaatgtaaatacaatTTGTAGTGTTCATAAAGCCCTGCAGCCTCGCTTGAAGAGCAGCAGGAGATGTGGTATTTATTGAATATCTTTGTATCTGTACTGTGTACATACATCACTCTATCTAAATGTTCAGTTACTTGTAAAACTGATTTTAGTAAATAAACATTATACAAAACCTGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09341 MSX; homeobox protein MSX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 96343 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 131550 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 149373 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 157482 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 251234 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 103698 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 116990 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 118594 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 191251 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 269213 19917116 ~ 19920280 (-) True G6242
XM_039816127.1 mRNA downstream 1408 19640531 ~ 19644093 (-) True LOC120568545
XM_039785291.1 mRNA downstream 5628 19604429 ~ 19639873 (-) False pnpla6
XM_039816558.1 mRNA upstream 32761 19680664 ~ 19690245 (-) False caly
XM_039816550.1 mRNA upstream 32761 19680664 ~ 19690244 (-) False caly
XM_039816545.1 mRNA upstream 32761 19680664 ~ 19690244 (-) False caly
XM_039816536.1 mRNA upstream 32761 19680664 ~ 19690244 (-) True caly
XM_039816186.1 mRNA upstream 55527 19703430 ~ 19713643 (-) False nsmce1
TU8277 other downstream 99574 19509261 ~ 19545927 (-) False G6084
TU8138 other downstream 663197 18971993 ~ 18982304 (-) False mcrip2
TU8084 other downstream 755281 18884968 ~ 18890220 (-) True G5930
TU7664 other downstream 1763742 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 1800097 17843936 ~ 17845404 (-) False LOC120556682
XR_005640950.1 other upstream 79218 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 80193 19728096 ~ 19728310 (-) True LOC120569594
XR_005640939.1 other upstream 81164 19729067 ~ 19729281 (-) True LOC120569665
XR_005640946.1 other upstream 82125 19730028 ~ 19730242 (-) True LOC120569683
XR_005640942.1 other upstream 83080 19730983 ~ 19731197 (-) True LOC120569670

Expression Profile