RNA id: XR_005636501.1


Basic Information

Item Value
RNA id XR_005636501.1
length 1052
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id LOC120544411
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 47726660 ~ 47728050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACTACCTCCGGGACAACCAGCGGTACCACAAGGGCAGCTGCCCCACTGCCAAGCTGGAAAATGCACAGTCCAAGGTGTCGAGGGTAAGATCTTTTACATTTTACCTGGCAAAGGGACAGACTGAATTGTTCAGTTGGCTGTTTTTAAGGAACATTGATGAAGCGGTGCCATGAGGGGGCCAAACTGAGGATCCCAGAGCTGCTGCACGCCCTGGAGGAGAACCACATGTCATCGCTGCGTAACCGTATTTACGGCTACTTTGCAGCATTCACAGCCTCCATATACGGTCATCACCCGGGGGGTACTCCGTAACCTCTGGGTTTGCGAGGTGGAGAAGGCTGCAGAGGCGCACAAGCCTGGCGATGAGGGTTTTGTGATCTCTGGAACACGAGACAAACAACTCAAATGGTGCGGCCCAAATGTTGTTGGAGACTGACGAGTTTCGCTGGCTGGAGAGGTGGCTGCAGCTGCAGGTGGCCAGCAAGCCACGAAccaggtgttttttttcacgGCTGGGAAGGGCCCGTGCAAGAACTTCTTGCACCACCTACAGGTAGCATGGGCAGAGCTGGGCCTCAAAGGGTTCCCCAACTTCACCCACCTGAGGACCGCTGTGTCTACTCATGCCAAGAACAACTTGCATGCCGAGCAGCAGAAGATGGTGGCCACCTTTATGTTGCCACAGCTGACTGCTTCTACACCCTCAGCCTGAACGTGGCCCAGTCAAAGAGGATGAGGGGCATTTCTGCCAGGCCCTCACCCACACCGTGCCGTCACCAGAagcctcatcctcctcctccaccaccaggAAGAGGTCCCGCTCTTACTGACTGCAGTAATGTAAAAGGatccttttctctgtctctccattcAACTGGATCTCTCACTTTTCTCTTACATTCTCTTGCTGCTATtctgctttgctttttttcagtGGTTtctatgggagaaaaacaaacaactttCATATGTACATTAGCCATGCCCTACAGAAATTGGGATTTTGTGtgttgatacattttgaaaccaCTGCACCACTTCAATAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16932 lncRNA upstream 56981 47669285 ~ 47669679 (+) True G12709
TU16931 lncRNA upstream 91043 47635271 ~ 47635617 (+) True G12708
TU16926 lncRNA upstream 161157 47565188 ~ 47565503 (+) True G12703
TU16924 lncRNA upstream 194626 47531821 ~ 47532034 (+) True G12701
TU16892 lncRNA upstream 499453 47226967 ~ 47227207 (+) True G12676
TU16986 lncRNA downstream 24735 47752785 ~ 47753314 (+) True G12756
TU16987 lncRNA downstream 50246 47778296 ~ 47778651 (+) True G12757
TU16997 lncRNA downstream 131311 47859361 ~ 47860027 (+) True G12767
TU17007 lncRNA downstream 194117 47922167 ~ 47922419 (+) True G12777
TU17008 lncRNA downstream 215888 47943938 ~ 47944362 (+) True G12778
XM_039808768.1 mRNA upstream 601173 46846017 ~ 47125487 (+) True LOC120564084
XM_039808779.1 mRNA upstream 601173 46846017 ~ 47125487 (+) False LOC120564084
XM_039808795.1 mRNA upstream 606026 46846017 ~ 47120634 (+) False LOC120564084
XM_039815239.1 mRNA upstream 1325295 46392846 ~ 46401365 (+) True si:ch73-6k14.2
XM_039805647.1 mRNA upstream 1352820 46346970 ~ 46373840 (+) True LOC120562127
XM_039776844.1 mRNA downstream 472820 48200870 ~ 48202754 (+) True LOC120543662
XM_039776742.1 mRNA downstream 486254 48214304 ~ 48296748 (+) False neurl1aa
XM_039776668.1 mRNA downstream 486258 48214308 ~ 48320857 (+) True neurl1aa
XM_039810075.1 mRNA downstream 769415 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 883229 48611279 ~ 48704119 (+) False LOC120556912
XR_005640059.1 other upstream 601173 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 605684 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 1308887 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 1518935 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 1519656 46206932 ~ 46207004 (+) True trnat-ugu
TU17111 other downstream 700750 48428800 ~ 48487894 (+) True G12872
TU17110 other downstream 700803 48428853 ~ 48488219 (+) False G12872
TU17112 other downstream 757198 48485248 ~ 48486493 (+) False G12873
TU17113 other downstream 757198 48485248 ~ 48486493 (+) True G12873

Expression Profile