RNA id: XR_005639709.1


Basic Information

Item Value
RNA id XR_005639709.1
length 1997
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id LOC120562219
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34264560 ~ 34270464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGTGTGACATTGATCTggcgttggtgagtaggagtctTGGCAGTGGCGATatttgtgtggtagtttccttagccgggCAAGCAGGCCCGACCGGCGTCCTTGCTTCTCCATCCTCCCCGCCTTCCTCGCCTGCCGCGGCCGACAACAATACAACGAGTGCCCGCtagtctggtggatgtcctccagaggacaggtcatgcctTCACAGCAAAAAAATTTAGTTTATATCAGGGTTCTAAATTAACACCCACCAACCCGTCAAATGCTGGTTAAAATTAATTTTGGCGGGTGTTAATAAACACTTACTAGCCAGTTTGGCTGGTGATGCATGAGACATTACATGCATGATACATCCGTCCTCGGTCATTTATCCCCCTGGCAGTACTTCCTACATTTCCCAAGAACATTGTGCCGTAATGCTGCGTGATGACATTTCATACTCCCATTGGCTGCGCGCAGTCTGAAGCGAAACCAGCGCGAGAAACCATGGAAACGAACGGAGCCAGAGCAGGGAGCATAGACTGAAAGAATAGGGAGTTAgctagtaaagtaaagtaaaaagttaAGATTAAACTAAATGCGGCAGTGGTTGGGTCAGACTTCTGGGGGCGAGAAGAGGAACGAGGCAGGGGATGAGGATATTGACAGAGAAacgaagaaaagaaaatgtaatgccAAATGGCTGACGGGTCGTGAATGGCTTGTGTTTGATCACGAAAATGTCGTCATGTTTTGTCAGGACTGCCACATGTAtgcgaaagaaaaaaacaaaacgaacAATTTGGTGGTAGGAACTAATAATTTTAAAGTCGAGGTAGTAAAGGACCATGAGAGTGCCCGAAGTCATCAGTAGAGCCTAAGGATTAAAACTGCCAAGACAGGTCATATTGAAGAGAGCCTTACCGGGAGAAGCCTTGCTTTATTGAAGACGTGAGAGTTGGAGAAGATGCAGCTACTTTTTCAGAATGCCCACCCCATTGGAAAAAAGGGCAGGCCTTTCACCGACTTCGCATGGATGTGTGATCCCAGGAGGCCACGAACATCAATGCTGTTCTGAGGCCAAGGGGTTCCTCAACATAGGCAAGGATGGTGGAGTGCTCAGGTTTTGCTGCCTTCTCCATGACACCATCTATCAACTGAGCAACCTCTCCAAGTCACTGCAGAGGTCAGTGTCAACCCTGGCTGAAGCTTAGAGCTGCCTTTCCTCCACTCAGGCCGTCATAGAAAAGTATAAGTCAAGACCTGGGCCTAAGCTGAGAGCAGTGCTGGACACAGACTCCTATGAGTGCCGACCAGCATGACAAGGCAAAGAATGAGCTAATTGATTCTCTGTACCGGTGCATCACTGCTAGATTTAGTGATGTGAAGAGTGGTGTCCTGCAGGCTATGCGGCTGACCAGTTTCCAGTGCTGGCCAGAGGCAGACACAAGTTCAGATTTTGGTGATGAAGAGGTAAACAATCTCATCAGTCACTTCCGACCTCTTTTACTGTCTGCTGGAGTGGATGTGGAGTTGATCCCTGATCAATGGACAATTCTCAAGACTTAACTGCACACAGCAGGATTCAGCCAAGGAACCTTTGAGAAGACCTGGCCTACTGTGAACAAAATGCTTCGCCATCGGTGTCCTGATGTCCTTGATCTTTTTGATGCTCTACCCACGATCCCTGCAGCTACACCTGACTGTGAAAGAGGGTTCAGTGTTATGAAGCAGGTAAAGAGTGACTGGCGCTCACGCCTAAAAATTGAGACCCTCTCTGACCTCCTTAAAACCCAGTTGTGCTCACCTGACATCAAAGACTTTGATCCAACCAAAGCCATTGACATCTGGCATGCTGACAGTTTGCACTTACGCAGGCCTGACTTTGTGCACAAACATGGAACAAAAGGAACAGagGGTGGCTCAGATTCTGATGGCACCACCtctgaagaagaagagctcTGAAGACATGCGATTcaaatgatagatagatagatagataggtaggtagatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13028 lncRNA downstream 41453 34222887 ~ 34223107 (-) True G9673
TU12990 lncRNA downstream 77783 34108113 ~ 34186777 (-) False G9639
TU13011 lncRNA downstream 78781 34102592 ~ 34185779 (-) True G9658
TU12988 lncRNA downstream 154622 34023083 ~ 34109938 (-) False G9639
TU13050 lncRNA upstream 59253 34329717 ~ 34329965 (-) True G9695
TU13100 lncRNA upstream 84544 34355008 ~ 34355326 (-) True G9730
TU13102 lncRNA upstream 94552 34365016 ~ 34365278 (-) True G9732
TU13118 lncRNA upstream 192494 34462958 ~ 34468183 (-) True G9745
TU13121 lncRNA upstream 203708 34474172 ~ 34478450 (-) True G9747
XM_039799815.1 mRNA downstream 659428 33592642 ~ 33605132 (-) True frg1
XM_039812116.1 mRNA downstream 675519 33580853 ~ 33589041 (-) True asah1b
XM_039787194.1 mRNA downstream 713003 33548703 ~ 33551557 (-) True sart1
XM_039787275.1 mRNA downstream 713033 33548703 ~ 33551527 (-) False sart1
XM_039810334.1 mRNA downstream 717177 33541549 ~ 33547383 (-) False LOC120564990
XM_039810220.1 mRNA upstream 119684 34390148 ~ 34400994 (-) True LOC120564947
XM_039811009.1 mRNA upstream 134588 34405052 ~ 34411361 (-) False tlr3
XM_039810998.1 mRNA upstream 134588 34405052 ~ 34411360 (-) True tlr3
XM_039805730.1 mRNA upstream 246323 34516787 ~ 34521757 (-) True npy2r
XM_039804103.1 mRNA upstream 256589 34527053 ~ 34529098 (-) True LOC120561135
TU12854 other downstream 746437 33497160 ~ 33518123 (-) False stox2a
TU12774 other downstream 980480 33283078 ~ 33284080 (-) True G9488
TU12680 other downstream 1129640 33092460 ~ 33134920 (-) False G9418
TU13113 other upstream 182386 34452850 ~ 34457635 (-) True G9740
TU13477 other upstream 1128176 35398640 ~ 35400474 (-) True G9997
XR_005640911.1 other upstream 1206767 35477231 ~ 35477360 (-) True LOC120569607
TU13574 other upstream 1314006 35584470 ~ 35586582 (-) True LOC120572869
XR_005640401.1 other upstream 1673584 35944048 ~ 35969266 (-) False micall1a

Expression Profile