RNA id: XR_005639998.1


Basic Information

Item Value
RNA id XR_005639998.1
length 210
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC120563682
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5200207 ~ 5200828 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTAGATACAATAAGGTAAGGTAAGTGTCCTGCTATGAACAGTAACAGACCTTTTAGATACAATAAGGTAAGGTAAGTGTCCTGCTATGAACAGTAACAGACCTTTTAGATACAATAAGGTAAGGTAAGTGTCCTGCTATGAACAGTAACAGACCTTTTAGATACAATAAGGTAAGGTAAGTGTCCTGCTATGAACAGTAACAGACCTT

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04670 Leukocyte transendothelial migration

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385 lncRNA downstream 76788 5118749 ~ 5123419 (-) False LOC120564103
TU2372 lncRNA downstream 103583 5075968 ~ 5096624 (-) True G1723
TU2344 lncRNA downstream 163682 5034505 ~ 5036525 (-) True G1705
TU2297 lncRNA downstream 374025 4821726 ~ 4826182 (-) False G1664
TU2298 lncRNA downstream 374025 4821726 ~ 4826182 (-) True G1664
TU2819 lncRNA upstream 30669 5231497 ~ 5353152 (-) False G2010
TU2790 lncRNA upstream 59162 5259990 ~ 5327757 (-) True G1994
TU2817 lncRNA upstream 70093 5270921 ~ 5289053 (-) False G2010
TU2811 lncRNA upstream 75222 5276050 ~ 5305165 (-) False G2010
TU2813 lncRNA upstream 75222 5276050 ~ 5305165 (-) False G2010
XM_039807848.1 mRNA downstream 49795 5148516 ~ 5150412 (-) True LOC120563591
XM_039808807.1 mRNA downstream 64902 5114020 ~ 5135305 (-) True LOC120564103
XM_039807374.1 mRNA downstream 134017 5037606 ~ 5066190 (-) True LOC120563200
XM_039807733.1 mRNA downstream 349633 4827103 ~ 4850574 (-) False LOC120563519
XM_039807726.1 mRNA downstream 349633 4827103 ~ 4850574 (-) True LOC120563519
XM_039807985.1 mRNA upstream 43087 5243915 ~ 5275696 (-) True LOC120563650
XM_039807930.1 mRNA upstream 200733 5401561 ~ 5407181 (-) True LOC120563624
XM_039807939.1 mRNA upstream 200733 5401561 ~ 5407146 (-) False LOC120563624
XM_039807947.1 mRNA upstream 200733 5401561 ~ 5407138 (-) False LOC120563624
XM_039807835.1 mRNA upstream 269235 5470063 ~ 5471326 (-) True LOC120563585
TU2392 other downstream 49788 5149923 ~ 5150419 (-) False LOC120563591
TU2375 other downstream 102573 5097369 ~ 5097634 (-) True G1726
TU2366 other downstream 114689 5076606 ~ 5085518 (-) True G1722
TU2371 other downstream 122653 5076606 ~ 5077554 (-) False G1722
XR_005639982.1 other downstream 416291 4774817 ~ 4783916 (-) True LOC120563598
TU2814 other upstream 87248 5288076 ~ 5305165 (-) False G2010
TU2812 other upstream 87511 5288339 ~ 5305165 (-) False G2010
TU2877 other upstream 295210 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other upstream 295210 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other upstream 295210 5496038 ~ 5499938 (-) False LOC120563672

Expression Profile