RNA id: XR_005640042.1


Basic Information

Item Value
RNA id XR_005640042.1
length 1621
lncRNA type inter_gene
GC content 0.36
exon number 4
gene id LOC120563981
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5793615 ~ 5795764 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTAAATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGTAGTATATAGAGGTGATTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATAGAGGTGATTAAGGTGCAGTATATATATGAGAAATGATCGTAGATTTAGGATTCTTCACCTCTGATTCTTCGGTCGTAGTCGTTGGCCAGCTCCATTAACTCCACCTGGTGTTTCTGGGGAGAATCAAAAGGAGACTTCTGTCACAGAGCAGCGCTGGAAGTAGTATTCACATCCTGTACTGCagttagagtactaataccacactgtaacaatactctggtacaagtaaaagtgtgtaagtatcatcaggaaaatgtagttaaagtattaaaagtgaaGAACAATCCTCCCACTGTAGAAAGTGGAAACTATCCAAAcagttcttttctttcttcccgtctttctgtctctctgtctgtctctttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2916 lncRNA downstream 61261 5731829 ~ 5732354 (-) False LOC120563692
TU2911 lncRNA downstream 101140 5689963 ~ 5692475 (-) True G2076
TU2904 lncRNA downstream 169130 5575852 ~ 5624485 (-) True G2070
TU2898 lncRNA downstream 286520 5502053 ~ 5507095 (-) True G2064
TU2883 lncRNA downstream 334542 5458781 ~ 5459073 (-) True G2056
TU2953 lncRNA upstream 7350 5802850 ~ 5807849 (-) True G2105
TU2966 lncRNA upstream 74201 5869701 ~ 5870003 (-) True G2118
TU2971 lncRNA upstream 86417 5881917 ~ 6023413 (-) True G2122
TU2975 lncRNA upstream 115678 5911178 ~ 5912263 (-) True G2126
TU2990 lncRNA upstream 266720 6062220 ~ 6063639 (-) True G2137
XM_039808067.1 mRNA downstream 56629 5731439 ~ 5736986 (-) False LOC120563692
XM_039808051.1 mRNA downstream 56629 5731439 ~ 5736986 (-) True LOC120563692
XM_039808060.1 mRNA downstream 56796 5731439 ~ 5736819 (-) False LOC120563692
XM_039808022.1 mRNA downstream 293622 5476545 ~ 5499993 (-) True LOC120563672
XM_039807973.1 mRNA downstream 321610 5471446 ~ 5472005 (-) True LOC120563643
XM_039808130.1 mRNA upstream 17865 5813365 ~ 5874875 (-) False kif16ba
XM_039808121.1 mRNA upstream 17865 5813365 ~ 5874875 (-) False kif16ba
XM_039808114.1 mRNA upstream 17865 5813365 ~ 5874875 (-) False kif16ba
XM_039808097.1 mRNA upstream 26136 5821636 ~ 5874875 (-) False kif16ba
XM_039808107.1 mRNA upstream 26136 5821636 ~ 5874875 (-) False kif16ba
TU2877 other downstream 293677 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other downstream 293677 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other downstream 293677 5496038 ~ 5499938 (-) False LOC120563672
TU2814 other downstream 488450 5288076 ~ 5305165 (-) False G2010
TU3000 other upstream 315639 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 406826 6202326 ~ 6206890 (-) False LOC120563747
TU3049 other upstream 471106 6266606 ~ 6267238 (-) True G2177
TU3116 other upstream 726006 6521506 ~ 6534312 (-) True G2219
TU3119 other upstream 726006 6521506 ~ 6534312 (-) False G2219

Expression Profile