RNA id: XR_005640492.1


Basic Information

Item Value
RNA id XR_005640492.1
length 173
lncRNA type intronic
GC content 0.49
exon number 2
gene id LOC120566926
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 891621 ~ 892123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaggTGCTGAATGCCAGTGTCATCCCGAGGGCCAGTTCATTGACAACAAGAGGCTTCAGAGAAGCTGCTTGGGTCAATTGATATTCCACTATGGCAGTACAAATTCGGACACACAAAGGTGTTCTTCAAGGCGGTCTGCTGGGTGTCCTTGAGGAGATGAGAGATGAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372 lncRNA upstream 79674 808561 ~ 811947 (+) True G270
TU299 lncRNA upstream 137901 708153 ~ 753720 (+) False LOC120566394
TU362 lncRNA upstream 199392 686445 ~ 692229 (+) True G261
TU320 lncRNA upstream 368632 522532 ~ 522989 (+) True G221
TU106 lncRNA upstream 481159 409741 ~ 410462 (+) True G55
TU253 lncRNA downstream 42054 934177 ~ 1012869 (+) False LOC120566368
TU383 lncRNA downstream 75207 967330 ~ 968520 (+) True G281
TU396 lncRNA downstream 224501 1116624 ~ 1122161 (+) False G292
XR_005640481.1 lncRNA downstream 410590 1302713 ~ 1303535 (+) True LOC120566887
TU416 lncRNA downstream 459397 1351520 ~ 1352050 (+) True G309
XM_039813541.1 mRNA upstream 33088 840662 ~ 858533 (+) True LOC120566870
XM_039813248.1 mRNA upstream 84578 803958 ~ 807043 (+) False LOC120566667
XM_039813240.1 mRNA upstream 85433 632750 ~ 806188 (+) True LOC120566667
XM_039813330.1 mRNA upstream 99716 788102 ~ 791905 (+) True LOC120566718
XM_039813269.1 mRNA upstream 117896 756425 ~ 773725 (+) False LOC120566682
XM_039812759.1 mRNA downstream 15717 907840 ~ 1012823 (+) True LOC120566368
XM_039812767.1 mRNA downstream 15719 907842 ~ 914983 (+) False LOC120566368
XM_039812853.1 mRNA downstream 34183 926306 ~ 1011615 (+) False LOC120566414
XM_039813108.1 mRNA downstream 81682 973805 ~ 984586 (+) True LOC120566581
XM_039813100.1 mRNA downstream 81692 973815 ~ 984158 (+) False LOC120566581
TU271 other upstream 293414 583390 ~ 598207 (+) True G176
TU279 other upstream 409731 477971 ~ 481890 (+) True G184
TU56 other upstream 677071 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 714559 175133 ~ 177062 (+) False LOC120560058
TU28 other upstream 818715 72084 ~ 72906 (+) False G11
TU268 other downstream 110303 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 124784 1016907 ~ 1019038 (+) True G199
TU395 other downstream 224501 1116624 ~ 1144413 (+) True G292
TU260 other downstream 252531 1144654 ~ 1158559 (+) True G165
TU241 other downstream 301538 1193661 ~ 1219085 (+) True G151