RNA id: XR_005640904.1



Basic Information


Item Value
RNA id XR_005640904.1
length 88
RNA type snoRNA
GC content 0.48
exon number 1
gene id LOC120569591
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 36211128 ~ 36211215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGCCAGTGATGACAAGCTAAATAACTTTTCTGACACCTCGTATGAGAGCTGCTCTGCGGCTCCTGATTCCAACTCTTATCTGAGGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13960 lncRNA downstream 44249 36162016 ~ 36166879 (-) False G10349
TU13961 lncRNA downstream 44249 36162016 ~ 36166879 (-) True G10349
TU13754 lncRNA downstream 279273 35931599 ~ 35931855 (-) True G10202
TU13752 lncRNA downstream 281868 35928749 ~ 35929260 (-) True G10200
TU13750 lncRNA downstream 290052 35920855 ~ 35921076 (-) True G10198
TU13978 lncRNA upstream 23090 36234305 ~ 36234691 (-) False slc5a10
TU13988 lncRNA upstream 65642 36276857 ~ 36280693 (-) False LOC120547992
XR_005637139.1 lncRNA upstream 70351 36281566 ~ 36284261 (-) True LOC120548049
TU13996 lncRNA upstream 70368 36281583 ~ 36283963 (-) False LOC120548049
TU13998 lncRNA upstream 75071 36286286 ~ 36286537 (-) True G10376
XM_039804075.1 mRNA downstream 7992 36190840 ~ 36203136 (-) True LOC120561124
XM_039804084.1 mRNA downstream 14176 36190840 ~ 36196952 (-) False LOC120561124
XM_039804094.1 mRNA downstream 14516 36190840 ~ 36196612 (-) False LOC120561124
XM_039804067.1 mRNA downstream 22359 36174688 ~ 36188769 (-) True ern2
XM_039815196.1 mRNA downstream 93270 36091933 ~ 36117858 (-) True abcc6a
XM_039783656.1 mRNA upstream 21992 36233207 ~ 36256876 (-) True slc5a10
XM_039783565.1 mRNA upstream 23383 36234598 ~ 36256880 (-) False slc5a10
XM_039783907.1 mRNA upstream 65639 36276854 ~ 36280814 (-) True LOC120547992
XM_039802139.1 mRNA upstream 77643 36288858 ~ 36326846 (-) True LOC120560033
XM_039804642.1 mRNA upstream 118566 36329781 ~ 36337148 (-) True LOC120561459
XR_005640401.1 other downstream 241862 35944048 ~ 35969266 (-) False micall1a
TU13574 other downstream 624546 35584470 ~ 35586582 (-) True LOC120572869
XR_005640911.1 other downstream 733768 35477231 ~ 35477360 (-) True LOC120569607
TU13477 other downstream 810654 35398640 ~ 35400474 (-) True G9997
TU13113 other downstream 1753493 34452850 ~ 34457635 (-) True G9740
XR_005640910.1 other upstream 1331 36212546 ~ 36212627 (-) True LOC120569604
TU13981 other upstream 23568 36234783 ~ 36243319 (-) False slc5a10
XR_005640907.1 other upstream 70792 36282007 ~ 36282095 (-) True LOC120569597
XR_005640908.1 other upstream 71090 36282305 ~ 36282393 (-) True LOC120569600
XR_005640906.1 other upstream 71412 36282627 ~ 36282716 (-) True LOC120569596

Expression Profile