RNA id: XR_005640924.1



Basic Information


Item Value
RNA id XR_005640924.1
length 215
RNA type snoRNA
GC content 0.39
exon number 1
gene id LOC120569623
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19741695 ~ 19741909 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTGACTTGAGAAATGGGTTTCTAAAGCGTTTGGTCTCGCTAACCATGATGATGAGTTGTGATATTCCTTTCAGAGCATGAAGGTGCAGCGAGTAATGATTCAGTTCATATGCTCTTTGTCATTGATGATTGCTCTTTGCTTCTTTATGAAGCATTGAGGAAGGGAATATGGTCAGAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 192537 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 227744 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 245567 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 253676 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 347428 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 9692 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 22984 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 24588 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 97245 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 175207 19917116 ~ 19920280 (-) True G6242
XM_039810990.1 mRNA downstream 17949 19714702 ~ 19723746 (-) True vps37a
XM_039816186.1 mRNA downstream 28052 19703430 ~ 19713643 (-) False nsmce1
XM_039816195.1 mRNA downstream 28072 19703430 ~ 19713623 (-) False nsmce1
XM_039816204.1 mRNA downstream 28199 19703430 ~ 19713496 (-) True nsmce1
XM_039816536.1 mRNA downstream 51451 19680664 ~ 19690244 (-) True caly
XM_039805323.1 mRNA upstream 24675 19766584 ~ 19796522 (-) False micu3a
XM_039805340.1 mRNA upstream 24675 19766584 ~ 19796522 (-) False micu3a
XM_039805305.1 mRNA upstream 24675 19766584 ~ 19796522 (-) False micu3a
XM_039805291.1 mRNA upstream 24675 19766584 ~ 19796522 (-) True micu3a
XM_039805348.1 mRNA upstream 24675 19766584 ~ 19796521 (-) False micu3a
XR_005640944.1 other downstream 756 19740726 ~ 19740939 (-) True LOC120569673
XR_005640976.1 other downstream 1726 19739755 ~ 19739969 (-) True LOC120569799
XR_005640923.1 other downstream 2696 19738785 ~ 19738999 (-) True LOC120569621
XR_005640919.1 other downstream 3666 19737813 ~ 19738029 (-) True LOC120569615
XR_005640931.1 other downstream 4639 19736840 ~ 19737056 (-) True LOC120569643
XR_005640935.1 other upstream 756 19742665 ~ 19742877 (-) True LOC120569653
XR_005640927.1 other upstream 1724 19743633 ~ 19743847 (-) True LOC120569628
XR_005640891.1 other upstream 2693 19744602 ~ 19744817 (-) True LOC120569541
XR_005640945.1 other upstream 3663 19745572 ~ 19745786 (-) True LOC120569680
XR_005640933.1 other upstream 4633 19746542 ~ 19746756 (-) True LOC120569646