RNA id: XR_005640927.1



Basic Information


Item Value
RNA id XR_005640927.1
length 215
RNA type snoRNA
GC content 0.39
exon number 1
gene id LOC120569628
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19743633 ~ 19743847 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTGACTTGAGAAATGGGTTTCTAAAGCGTTTGGTCTCGCTAACCATGATGATGAGTTGTGATATTCCTTTCAGAGCATGAAGGTGCAGCGAGTAATGATTCAGTTCATATGCTCTTTGTCATTGATGATTGCTCTTTGCTTCTTTATGAAGCATTGAGGAAGGGAATATGGTCAGAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 194475 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 229682 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 247505 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 255614 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 349366 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 7754 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 21046 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 22650 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 95307 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 173269 19917116 ~ 19920280 (-) True G6242
XM_039810990.1 mRNA downstream 19887 19714702 ~ 19723746 (-) True vps37a
XM_039816186.1 mRNA downstream 29990 19703430 ~ 19713643 (-) False nsmce1
XM_039816195.1 mRNA downstream 30010 19703430 ~ 19713623 (-) False nsmce1
XM_039816204.1 mRNA downstream 30137 19703430 ~ 19713496 (-) True nsmce1
XM_039816536.1 mRNA downstream 53389 19680664 ~ 19690244 (-) True caly
XM_039805323.1 mRNA upstream 22737 19766584 ~ 19796522 (-) False micu3a
XM_039805340.1 mRNA upstream 22737 19766584 ~ 19796522 (-) False micu3a
XM_039805305.1 mRNA upstream 22737 19766584 ~ 19796522 (-) False micu3a
XM_039805291.1 mRNA upstream 22737 19766584 ~ 19796522 (-) True micu3a
XM_039805348.1 mRNA upstream 22737 19766584 ~ 19796521 (-) False micu3a
XR_005640935.1 other downstream 756 19742665 ~ 19742877 (-) True LOC120569653
XR_005640924.1 other downstream 1724 19741695 ~ 19741909 (-) True LOC120569623
XR_005640944.1 other downstream 2694 19740726 ~ 19740939 (-) True LOC120569673
XR_005640976.1 other downstream 3664 19739755 ~ 19739969 (-) True LOC120569799
XR_005640923.1 other downstream 4634 19738785 ~ 19738999 (-) True LOC120569621
XR_005640891.1 other upstream 755 19744602 ~ 19744817 (-) True LOC120569541
XR_005640945.1 other upstream 1725 19745572 ~ 19745786 (-) True LOC120569680
XR_005640933.1 other upstream 2695 19746542 ~ 19746756 (-) True LOC120569646
XR_005640951.1 other upstream 4036 19747883 ~ 19748098 (-) True LOC120569711
XR_005640949.1 other upstream 10659 19754506 ~ 19754719 (-) True LOC120569701