RNA id: XR_005640930.1



Basic Information


Item Value
RNA id XR_005640930.1
length 217
RNA type snoRNA
GC content 0.39
exon number 1
gene id LOC120569638
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19735864 ~ 19736080 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTGACTTGAGAAATGGGTTTTCTAAAGCGTTTTGGTCTCGCTAACCATGATGATGAGTTGTGATATTCCTTTCAGAGCATGAAGGTGCAGCGAGTAATGATTCAGTTCATATGCTCTTTGTCATTGATGATTGCTCTTTGCTTCTTTATGAAGCATTGAGGAAGGGAATATGGTCAGAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 186706 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 221913 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 239736 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 247845 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 341597 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 15521 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 28813 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 30417 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 103074 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 181036 19917116 ~ 19920280 (-) True G6242
XM_039810990.1 mRNA downstream 12118 19714702 ~ 19723746 (-) True vps37a
XM_039816186.1 mRNA downstream 22221 19703430 ~ 19713643 (-) False nsmce1
XM_039816195.1 mRNA downstream 22241 19703430 ~ 19713623 (-) False nsmce1
XM_039816204.1 mRNA downstream 22368 19703430 ~ 19713496 (-) True nsmce1
XM_039816536.1 mRNA downstream 45620 19680664 ~ 19690244 (-) True caly
XM_039805323.1 mRNA upstream 30504 19766584 ~ 19796522 (-) False micu3a
XM_039805340.1 mRNA upstream 30504 19766584 ~ 19796522 (-) False micu3a
XM_039805305.1 mRNA upstream 30504 19766584 ~ 19796522 (-) False micu3a
XM_039805291.1 mRNA upstream 30504 19766584 ~ 19796522 (-) True micu3a
XM_039805348.1 mRNA upstream 30504 19766584 ~ 19796521 (-) False micu3a
XR_005640928.1 other downstream 763 19734887 ~ 19735101 (-) True LOC120569633
XR_005640947.1 other downstream 1738 19733909 ~ 19734126 (-) True LOC120569689
XR_005640936.1 other downstream 2719 19732928 ~ 19733145 (-) True LOC120569659
XR_005640922.1 other downstream 3696 19731954 ~ 19732168 (-) True LOC120569617
XR_005640942.1 other downstream 4667 19730983 ~ 19731197 (-) True LOC120569670
XR_005640931.1 other upstream 760 19736840 ~ 19737056 (-) True LOC120569643
XR_005640919.1 other upstream 1733 19737813 ~ 19738029 (-) True LOC120569615
XR_005640923.1 other upstream 2705 19738785 ~ 19738999 (-) True LOC120569621
XR_005640976.1 other upstream 3675 19739755 ~ 19739969 (-) True LOC120569799
XR_005640944.1 other upstream 4646 19740726 ~ 19740939 (-) True LOC120569673