RNA id: XR_005640945.1



Basic Information


Item Value
RNA id XR_005640945.1
length 215
RNA type snoRNA
GC content 0.39
exon number 1
gene id LOC120569680
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19745572 ~ 19745786 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGACTATACTTTCAGGGATCATTTTTATAGTTTCTGACTTGAGAAATGGGTTTCTAAAGCGTTTGGTCTCGCTAACCATGATGATGAGTTGTGATATTCCTTTCAGAGCATGAAGGTGCAGCGAGTAATGATTCAGTTCATATGCTCTTTGTCATTGATGATTGCTCTTTGCTTCCTTATGAAGCATTGAGGAAGGGAATATGGTCAGAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 196414 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 231621 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 249444 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 257553 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 351305 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 5815 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 19107 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 20711 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 93368 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 171330 19917116 ~ 19920280 (-) True G6242
XM_039810990.1 mRNA downstream 21826 19714702 ~ 19723746 (-) True vps37a
XM_039816186.1 mRNA downstream 31929 19703430 ~ 19713643 (-) False nsmce1
XM_039816195.1 mRNA downstream 31949 19703430 ~ 19713623 (-) False nsmce1
XM_039816204.1 mRNA downstream 32076 19703430 ~ 19713496 (-) True nsmce1
XM_039816536.1 mRNA downstream 55328 19680664 ~ 19690244 (-) True caly
XM_039805323.1 mRNA upstream 20798 19766584 ~ 19796522 (-) False micu3a
XM_039805340.1 mRNA upstream 20798 19766584 ~ 19796522 (-) False micu3a
XM_039805305.1 mRNA upstream 20798 19766584 ~ 19796522 (-) False micu3a
XM_039805291.1 mRNA upstream 20798 19766584 ~ 19796522 (-) True micu3a
XM_039805348.1 mRNA upstream 20798 19766584 ~ 19796521 (-) False micu3a
XR_005640891.1 other downstream 755 19744602 ~ 19744817 (-) True LOC120569541
XR_005640927.1 other downstream 1725 19743633 ~ 19743847 (-) True LOC120569628
XR_005640935.1 other downstream 2695 19742665 ~ 19742877 (-) True LOC120569653
XR_005640924.1 other downstream 3663 19741695 ~ 19741909 (-) True LOC120569623
XR_005640944.1 other downstream 4633 19740726 ~ 19740939 (-) True LOC120569673
XR_005640933.1 other upstream 756 19746542 ~ 19746756 (-) True LOC120569646
XR_005640951.1 other upstream 2097 19747883 ~ 19748098 (-) True LOC120569711
XR_005640949.1 other upstream 8720 19754506 ~ 19754719 (-) True LOC120569701
XR_005640952.1 other upstream 9770 19755556 ~ 19755769 (-) True LOC120569716
XR_005640962.1 other upstream 15224 19761010 ~ 19761225 (-) True LOC120569749

Expression Profile