RNA id: XR_005640947.1



Basic Information


Item Value
RNA id XR_005640947.1
length 218
RNA type snoRNA
GC content 0.40
exon number 1
gene id LOC120569689
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 19733909 ~ 19734126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTGACTTGAGAAATGTGTTTCTAAAGCGTTTGGTCTCGCTAACCATGATGATGAGTTGTGATATTCCTTTCGGAGGCATGAAGGTGCAGCGAGTAATGATTCAGTTCATATGCTCTTTGTCATTGATGATTGCTCTTGCGCTTCTTTATGAAGCATTGAGGAAAGGGAATATGGTCAGAGTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8287 lncRNA downstream 184751 19548778 ~ 19549158 (-) True G6093
TU8278 lncRNA downstream 219958 19489588 ~ 19513951 (-) True G6084
TU8280 lncRNA downstream 237781 19493882 ~ 19496128 (-) True G6086
TU8271 lncRNA downstream 245890 19481135 ~ 19488019 (-) True G6081
TU8229 lncRNA downstream 339642 19387327 ~ 19394267 (-) True G6052
TU8343 lncRNA upstream 17475 19751601 ~ 19751818 (-) True G6131
TU8348 lncRNA upstream 30767 19764893 ~ 19765387 (-) True LOC120569510
TU8358 lncRNA upstream 32371 19766497 ~ 19769027 (-) False micu3a
TU8474 lncRNA upstream 105028 19839154 ~ 19841715 (-) True G6233
TU8490 lncRNA upstream 182990 19917116 ~ 19920280 (-) True G6242
XM_039810990.1 mRNA downstream 10163 19714702 ~ 19723746 (-) True vps37a
XM_039816186.1 mRNA downstream 20266 19703430 ~ 19713643 (-) False nsmce1
XM_039816195.1 mRNA downstream 20286 19703430 ~ 19713623 (-) False nsmce1
XM_039816204.1 mRNA downstream 20413 19703430 ~ 19713496 (-) True nsmce1
XM_039816536.1 mRNA downstream 43665 19680664 ~ 19690244 (-) True caly
XM_039805323.1 mRNA upstream 32458 19766584 ~ 19796522 (-) False micu3a
XM_039805340.1 mRNA upstream 32458 19766584 ~ 19796522 (-) False micu3a
XM_039805305.1 mRNA upstream 32458 19766584 ~ 19796522 (-) False micu3a
XM_039805291.1 mRNA upstream 32458 19766584 ~ 19796522 (-) True micu3a
XM_039805348.1 mRNA upstream 32458 19766584 ~ 19796521 (-) False micu3a
XR_005640936.1 other downstream 764 19732928 ~ 19733145 (-) True LOC120569659
XR_005640922.1 other downstream 1741 19731954 ~ 19732168 (-) True LOC120569617
XR_005640942.1 other downstream 2712 19730983 ~ 19731197 (-) True LOC120569670
XR_005640946.1 other downstream 3667 19730028 ~ 19730242 (-) True LOC120569683
XR_005640939.1 other downstream 4628 19729067 ~ 19729281 (-) True LOC120569665
XR_005640928.1 other upstream 761 19734887 ~ 19735101 (-) True LOC120569633
XR_005640930.1 other upstream 1738 19735864 ~ 19736080 (-) True LOC120569638
XR_005640931.1 other upstream 2714 19736840 ~ 19737056 (-) True LOC120569643
XR_005640919.1 other upstream 3687 19737813 ~ 19738029 (-) True LOC120569615
XR_005640923.1 other upstream 4659 19738785 ~ 19738999 (-) True LOC120569621