RNA id: TCONS_00006508


Basic Information

Item Value
RNA id TCONS_00006508
length 8010
RNA type mRNA
GC content 0.42
exon number 20
gene id XLOC_003325
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12879635 ~ 12955738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTCATCAACTAGATCTCACTTTTGTGGGAGTAGCACAGCAGAGAATTGAAGCAAGGAAAGGACTCTGGGAACTGATAAGCATGTCTTCCACGCAAATCCAAGAGTGGAAATTACTACATTTCAGAAAGTTTGTGGTGACTAAAGCCCAAGACGTGGTTGGTTCCTGGATACAAAAGGCAGAAACATTTGCTAAAGTCATACCTTTCCATGATGCATTGCTGCAGAAAAACCTGCAGATTTTACAGGCCTTTAACCAGTTCCTTTCTGTATTGAGTAAGCTGATTAGTCCCACTCTGAAGCACAAGCACTGGAGAAACATCTCAAAGGCAATTGGTCTGGCGTATGACCCAGAATGGAAATTAACAGTAGCTGATCTCTTGTCCAAAGACCTGCAGAGGcatcaaaataaaatcaataagATTTGTCTTGATTCCAAAGCTGAGACAGACATGGAACAGATGTTCAGAGCTCTTCAGAGGCAATGGGAAACAGCAGAGTTCCATCATAAAAGGTTCATTATTGCTGTCCAGCAACAGCAGACTCCACAACTAGGTGATGTCTTACCTCAAAATGCACCAAAACATCACATTAGTGATGGTGGAACATTCACTATTACTGGTATAGAGACACTTCTGGCTCATTCTAAGGAAAGTGTTCTGATCCTTTCCGACATGCTGCGTTCTCCATATGTTGATGAGTTTCAGAAAGATGTTGAACACTGGCTTCTGTTTTTACAAGAGCTGGATGAATTGCTTGATATATTTGAGAGATATCAGCAGAAATGGATCTTTATAAGCCGAACATTCAATGAAAATGTGCATCAAAAGTTTGAgttgCAAGAGAGGTTTCACCCGGCAGATAAGTTGTTTCGTGAAATCATTGAGATCACAGTCAATGACCCACATGTATGTAGTTTTGTTCATCTGAGTACAAGAACAGAGTTCAGTGACACTTTACAAGGTCAAAGTCTACGTGCTGCCTTTCTGAACGGACTCACAACAATGGAGGAGATTTCCAATCATTTTCTTAATGTATTGGAGTCAGCACGCAGCCAGTTTCCCAGACTCTACTGTCTCAGTGATGGAGAGTTGATAAAACTTCTCTCTTTACAACTTCCAGCACCTTCCTCCCTTTTACAACTCATACAGAAATGCTTCACTGGAGTGAAGCAACTTGATGTTCAAGTCGAAGGTAATGTCTGCAGTACACATGACTTGACAGCTCTTACTAATGAGCGAATGTTGGTACATGGCATATATGGAGAATTTGATGAATACGTTCCCTTCATATGCCCACTTAAGTCAAACCTCAATCCTGTGGCTTGGCTTGGTTTATTTGAGCAAAAGTTAAATCAAGCAGTGAAACTTAGGTTTGTAAAATGCTTAGCCATCCAGCAAAAATCGAAGCATGGAAAGCTTTTTAGAGACCCAGACCTGATTGAGCATAACAAGAGTAACAGTTCTGAAGTAGCTCATGAAGAACTTTTAAAACTAATATCTCAGTATCCTTTGCAATGTCTTTTGGTGGCAGATGAGGTGCTGTGGTTTAGTACAATCCAAGAGTCAAATTGTGCAACTGCTGACATGTGGAAGACAATAAAGTGCCAAAAAGCTGCACAACTGCACTATTTGTGCCAGCTTATTAATGAAAATTCCACAGATTCAAATAAGAACCCGTCTCGGCGCATCTTGACAGCTCTGCGTGCCTTGATTATGTTGACCTTAAAGCACTCTTGCCAAGCCGATGGGCTTGTCAAAGTGAAAGGAGATTTGGAGACCTCTTTTGAATGGCAGAAGCTTATGAAGTATTACCTTATTCCAAATGCAAATGCCATTGCTAGTGATTTACTTCCATCTCCAGAGGATCAGTCTGTCTGTGTTGATATTCTGCGCACACAATTGCCATATGGCTATGAATACATTGGACCTGAGAACTGGACCATGGTGAATACCCCTTCAACTGAACAAGCTTACATGGGCATAATTCTTGCTCTTTCCAGCTTCAAGTGTGCTTTCATCAGTGGACCCTACATGTCAGGCAAGCAGCATGCTGCTGTGCAGCTGGGTTACGCACTGGGTCGACAAGTGGTTATATTGAAGTGTTGCTCAAGCACTAGATCCTCAGTCATTTCCCAAACGCTTCTAGGTGCTCTTCAAAATGGAGCTTGGCTAGTACTTGATTCAGTGGATTTGTTGGAACAAGGGACATTGTCTGATTTGGGACAACACTTGACCGAAATTCATCAAAATTTATCAGCAGTTCAAAGACAAACACAAGAAAAAGAACATGAGTTTTTTGAGGTGGAATGTCACATTGCTGGGAAAAAAAATATACCGGTCAAGCTTACTTATGGATGTATCACAATCTCAGCTAATGGCTACTCAACTAAGATGCCAGAAAATTTGAGAGCTGCGGTGAGGCCTGTCACACTGATGAAGCCACACTACAGAATCATTGCAGAAGTGATGTTGTTGTCATATGGGTTTTCTGAAGCTGCTGATTTAAGTCGCCGCCTGGAATGTCTCTTTAGGCTTGCAAAGGATTTACATTGCCTTCCTGATTTTGTGAGTGGACATCAGACCTCTTGGCTTGTCCTTCTCAGAAATGTGATTTCTTCCTCTGGAACACATTTAAACCTCTTTCGTCATTTGAAAGAAACTGACAAGTTCAGAGAACATTTTAAGTTTGCCAATCAGTCCAAGAAAATTATGAATGCTGATTTAGAGGAGCAAGCTACAATCAAAGGGGTGCTGTCAGTCATGCAGAATACTGTCTCAGATCCAAAGAGAGCAACAAAGTTTCATAAAATATTTGAGGAAACCTTTCCAAAAGTAAGGCACTTTGCAAGTCTACAACAAATTATTGATGAagaagaacaaaatattttaagaaatgcAGTGAAAGATGAGTTGCAGCATCAAGGATTTCACGCAGACGCACAGATGCTTGATAATGTGTTGATTCTACATCAAGCTTTGAAGGTTTCCAATGTTATAGTGCTTCTTGGGCCAGCAGGTTGTGGCAAAACAACTTTATATCAAACCATAGCAAGTACATTTCAGAAACTTTCCAGGATTCTTGATGTTGAATCTACAGGTCAGCATAAAGGAGATTTCAAAGACGACTATCATGAGTTGCCTATGCCATGTTGCCCTCCTGTGAGCATTGAGGTTATATTCCCCAATGCCTTGACCCACAAACAATTTTTCGGTGGTTATTTTGACATGGACAGTTCCTGGTTTGATGGAGCTTTCACTAAAGCATTAAGACGCTCAGGACAGATCACCCCTTCCAAAAGAAAGAAAGCTGTGCAAACCCAATATGTGAATTGGATTGTGCTAGATGGCGATCCAGTCGGCGAACCTGCTTGGTTAGACTCTTTGACAACTCTTCGTGATCTTGAACATCCTCATCTTTACCTCTCATCAGGAGAGAAAGTTGAACCATCGAAACTGAAAATACTAACTGAGATCACAAACCTCGGTGATTCAACACCCTCTGTAGTGGCACACTGCAGTCTAGTGTATGTTTCTGGTGAGAACCTGTGGAGATCTGTGTGGGAGAGTGAGATGGATGTTCTCTCTAGAGAGCACATTGTGGACCAGATTACTCTGAAAATGTGGAGACAGCTTTCCGAAGACCTTTTCTCTGACACATTAGTGTTTCTTAAAAACACCGTTCTTTCTCCAATGATGGCCAGCGGTGGATGTGAAGGCAAACAGGCATCTAGGATTACTGAGGGTTTGCAGGAAATAACGAgtttcattaagattctttgtgCGCTTTTGGAACATTCGGGGAAGGGAGGAGCCTCCAAATTCACTTCAAGGGAAACCCAAACAGAAGACAGTGCACAAGTTCTCCAGCCACCATGCACTGATGCCATGGCTATTCAGTGGGGACTGCAAGCAAGAAACATCTTTTTTGTTGCTTATATTTGGGGATTTGGAGGACATTTGCATCCTAGGCACTGGCTGCATTTTGATCTTTTTGCACGCGAGGCCCTGTATAAGAGCTGTTGCAAAGTTGAGACTCCTCCAGAAGGCACAGTATTTGAGCATTTCTTTGAATTCAGTGAGGAAATGGGAGACACAACCAATTTCCTTGACTGTAGCACTCGGAAGAGTCCACCGCTGTTCTTCACATCTGTGCCTCAGTATGAAAGACATGCATATCTTCTGGACATGCTGCTAGATGTTCATCAGCCAGCTCTTCTCGTCGGAGAGGTTGGTTCTGGCAAAACGATGTTGTGCAAGTCTTTAGTATCACAAGCAAGAGCACACATACATTTACCAACCAGTCCAGGCCTTCACCCTTTTGACTTTTGCAAGACAGTTGAGAAAGTTAGATATAAGAAAACTCAACTACACAACAGTAAAGTCTCAAAGAAGCCAGACTTAATTCTGTTCATCGACGACCTTCATGAAGCACCATTTGATGCTTGTGGAAAAACATCCAAGACTCTTGAGACACTGCGTCAGTGCATTTCTAGAGGTGAAGTGTTGGTATCAGACGGCTCTCACTTCAAGCTTTTTCAATCAAGATCCATTAATTATCTGGCCACTTGCAGTGTTCCTGAGACAAGCGACAGCTACTGGATTTCTCCACGGCTCTCTCGACTGTTTGTCATCTTGACTCTCCCAAGCATGACTTCTGAAACACTCTTTTCTATCCATTCCTCAAAACTGCAACCATGGCTGAGAGAAATACAACCAACACTGAGCGTTGCAGACAGAGCAAACTGCATTATTACCTCAACTCTTGACGTATACCTTGCAGTGCGTGAATGCTATGCTGTAACCTCGAGTCCATACTTTATCTTCTCTTTGCATGATATACATAAAGTGTTTCAAGGGATGTATCTCTGGAGGTCAAGGCTTGATGGCCAGCAGGCTCTTCGGAGTAGTCTTCAGAGTAGTTTTGGTTTTCGAAGCTCCACTTCAACTGAAAGATCAGTCTCTTCTCCATCTGTTCTTGAACATGACCTCAATATTGTCCGCCTGTGGATGCATGAGTGTTTGCGGACTTTTGGTGATCGCCTAGATTCAGAAGCTGCATGTCAAAAACTTATCTCAATCATAGCTGAAGTTTCTGAGAAGAATTTTAGCACGATGTTGTCAACTGAATCTCAAACACTTCCAGCAGATAACTCAAGCCTTACAGACATGTTATCTGTAACGAGGACATATGTAAACCAACAACTGGATTCAAGCTCTTCGCAGATGGATGAAACTTTGAATCCTTGGATTGTTAAAGCAGAAGTTCAGACAGAGAGCGAAGAGACCAATGTAGAAAGCAACTCAAGCTTGTACAGCACAGGAATTGATGAAGATGGATTCTCATACAccaatgacaatgtaaaaaaggcTGGAAATTTTGAGAGTGATCCAGGAACATCAGAGTTGATATCTGAATCTTCAAGTTGTTCATTTCCAATGTTGTTTTCTTCTCTTTCTTCTCATTCTGTTGGAAACGATGTCAACCACAAACCATCATCACATGAAGAGTTTCTACAACGTCTACAAGAAACAGCTTCTTCCATCCAGAATGTGATTTTCAGTCCAGAACTTTGTGAAACGTCAAAAAACATTCTCCTGCATCATAATTTCAAACGCACCTGTGTGTATCAAGAAAGGAATGTTGATGTGTTGGTTGACCAGCTAGTTCATACTCTTAAAAGAGAAGAAAGTAATGAAGAAAAGTCAGAAAACACTCTCTATAATCCAACATGGGCTGTTCATCACCAGAATGTTCATCAACTTGTGCATGTCATCCGAGCTTTTCTCATTCCTGGTGGACATGGGGCTCTTTTTGGAGGAGCAAAGAAAACAGGGAGAAAGACTATTGTGCGTCTAGCAGCTGCTCTGACGGGATATCAACTAGTCGAGGTTCATTCTGGAAATGAGACAAAGATATGGGGAATGATGAAAGACATTTGGAGCCAGACTGGGGTGAATGCTGGAGATTTGGTTCTACTAGTTCACGAGAATACCAGCCAAGCTGTAAAGGATCAGCTGCTGGTAATGATGGCCAATGGAAGCTTTCCTGGACTGTATTCAGATGAAGAACTGAAGAATGTGACTCTCCGGATGAAAGCGTTGATGAAAGATGCACATTGTTATATGAAGGATGATCAAGTTCTTGAAATCTTTCTTCCACATATCACCAAGGCTTTGAGTATCTGCTGTTGTGTAGAAGTGTTTCAACCTTGGACCTCTGAAGCTTTAGTTGAAAGTGCTTTGTATCATTTAAAAGCCAGTCAGCAGATTCCTGAGACAGCTGGTACAGTTGCCAAGGATAACTTAGCAGCTAGTATTTCTAAGGCAATGGCAAGGATACATTTATTAGCTTCAAAATATGCTGTCACGCTTCTTCATCTTCAACCGTTTGGCTGTCGGTCCTACGTAGAGCTGATggttcagtttttctttttctgtcacCACCTGTTTGAGAAAAACAGAGTTCAGGACAGCCGGTTGGGGAAGGTTCTAGCACATGTGAAGGACATGACAGACACAGCTGCAAGGCACACTCAGAAAGTTCTGACCTTTAGGGCCAAATGTGAAGAAAAACAGAAGTGTATTGACCAGCTGCAGAAATTGGTAAATCCTGCACAGAAAATCTGGGAACAAAAGCACCACCAAAGTGTTCAGGAAGAAAAATGGCTTTCTAATCTAGAAGATAATTTGCTCCGAGTTCAGCAGCAAGTTCAAGACGCTTTTAAACAGGTGAGTCCGCTGTACCAAGCCGCTCTGGAGGCTCTGCAGGCTTTGAGCCAGTCAGATTTGGATGAGATTCGACACTACAGGATGCCGCCTGATGGAGTCGTCATGGTCATGGATATTATATGCATGTTATTCAACCGTCCATGTGGCTGGGACAGTAGCAGACAACTTATGGAACTGGAATTTTTCGACTGCTCTAAATTAACCAATCAGACAATTCAAAAGTTGGGTCACATCATACAGACACCTTGTTTTCAGCCAGACTCTGTACGAGATATGAGTCGGGCTTGTGAGTCTTTGTGTCGCTGGGTGAGAGCAGTATACCAGTATGCTTGCATACAGCGCCACATTGCACCCCAAAAGGCTAAAAAGCAAGATTTGGACTATCTCATGGCCGAAAGTCGAGAAAGGCTGAGTGTTTTGAGGCTACAGATGGAGTCAGAGCGGGAAAGACTAGATGAACTGGAGAGACAGCAGGAGCTCAACAAACAAGACATGGAGTTGCTGAAGGCCCAACTCAGTACCGCTGAGGCTCAAGAGAGGGAGTCATGTGCTATTCTTAAACTGGCTGAACATCACATTAAAGACTGGATATCAGAAGGAAAGGAAGCAACATTGGCTAATCAAAGCATTCCAGGTGATGCCCTCATTTTGGCAGCTGCAGTTACTTACTTGGGTCCATTTGGCCCTGATGTTCGACAAGAGCTGCTCCTGAAGTGGCACAAACTTTGTCTGACTGGGGAAATGAATATGACTCTGGAGGACCCTCGTGCTACACTTCTGGATGATGTTCCCTTTGCAACTTGTGATCACTATGTGGCCATTCCCGTCAGTAAGACATTTCAAATTGCTTTCAATCAAATACTTGGACTAGATCTGCATCACATACATGAAGATTCCTCTGATCTGGTCCGAAGTGTCCTTCTCTGGGGGAAAAGAGATACTCGAGCACAACGTTGCTATTTATtggcaaattgtcataaatatgaGGAACCCAACTCTCAGACATTGTTTTCTTCTGGTCAGTCTAAAAGTCATGCAGAGGCTAAATATGGACTTACAGTTTCTTCTGATGATCCAGAGTTACTTGATAAACTGAATCATGGAGCGAAAGAAGGTCTAAGAGTATTGGTGAAGCATATTGAACGAGCAATACCAAATCTGCAAGTCCTTCAGGCATTTGTAACACCAGAAACCTGTGGTAATAGCCACACAGTTCAGTCTGCTCATCCTGACTTTCATCTTATTATGAGCACTTCCCTTCCAATCCGAACTCTGATACAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008396 lncRNA upstream 7124 12889291 ~ 12889880 (+) False XLOC_003325
TCONS_00008395 lncRNA upstream 16133 12879727 ~ 12880871 (+) False XLOC_003325
TCONS_00008574 lncRNA upstream 111945 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00006501 lncRNA upstream 144643 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00006494 lncRNA upstream 178602 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00006518 lncRNA downstream 226223 13151919 ~ 13152385 (+) True XLOC_003329
TCONS_00006523 lncRNA downstream 262439 13188135 ~ 13189006 (+) True XLOC_003331
TCONS_00008575 lncRNA downstream 268027 13193723 ~ 13194597 (+) False XLOC_003332
TCONS_00006539 lncRNA downstream 716465 13642161 ~ 13649258 (+) True XLOC_003340
TCONS_00006546 lncRNA downstream 1155844 14081540 ~ 14082177 (+) True XLOC_003344
TCONS_00006504 mRNA upstream 21816 12860260 ~ 12875188 (+) False XLOC_003324
TCONS_00006505 mRNA upstream 23839 12860438 ~ 12873165 (+) True XLOC_003324
TCONS_00006503 mRNA upstream 37741 12811906 ~ 12859263 (+) True XLOC_003323
TCONS_00006499 mRNA upstream 126458 12744575 ~ 12770546 (+) False XLOC_003321
TCONS_00006510 mRNA downstream 98306 13024002 ~ 13055802 (+) False XLOC_003326
TCONS_00006511 mRNA downstream 106787 13032483 ~ 13038233 (+) True XLOC_003327
TCONS_00006512 mRNA downstream 115645 13041341 ~ 13047246 (+) False XLOC_003326
TCONS_00006513 mRNA downstream 115708 13041404 ~ 13055807 (+) False XLOC_003326
TCONS_00006514 mRNA downstream 115726 13041422 ~ 13055805 (+) True XLOC_003326
TCONS_00006493 other upstream 185008 12711700 ~ 12711996 (+) True XLOC_003318
TCONS_00006492 other upstream 202741 12693967 ~ 12694263 (+) True XLOC_003317
TCONS_00006491 other upstream 211405 12685304 ~ 12685599 (+) True XLOC_003316
TCONS_00006490 other upstream 216976 12679732 ~ 12680028 (+) True XLOC_003315
TCONS_00006489 other upstream 273153 12623555 ~ 12623851 (+) True XLOC_003314
TCONS_00006509 other downstream 4461 12930157 ~ 12946210 (+) True XLOC_003325
TCONS_00006540 other downstream 891873 13817569 ~ 13817684 (+) True XLOC_003341
TCONS_00006541 other downstream 939150 13864846 ~ 13864964 (+) True XLOC_003342
TCONS_00006553 other downstream 1274200 14199896 ~ 14248440 (+) True XLOC_003347
TCONS_00006565 other downstream 1407745 14333441 ~ 14340783 (+) False XLOC_003351

Expression Profile

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