RNA id: TU100406


Basic Information

Item Value
RNA id TU100406
length 4109
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G75065
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22982892 ~ 22987322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCTTTATACTTGAAGTTTATTAATTTGttcaaaaacaaatatacacaatATTTACAAAATGGCAGTTTATCATGTCAGATCTGTAGATAGGAAGGAGGCATTGCAGATTAAACTTCAGCTTCAGTTGTTGGTGAGCTGCAACAAACTATTAAAGCATTGCAGACGCAATACAATACTTACTAGTGAGAGTGACTAATTGCAAACGGGAAACGATCACAAACATACTcaacagaaaaggaaaagataAGAATGAGGAGAGaacaaaaaagtacacATCCTGGGCTGTTAATGCTGAAAACCTGAGACATCAGATTTACACACTTTAACcatgtgtaaaaaaagaaagaaaaaaataagaagaaaatctTACATTTACACCAACCAAAGGCAACAAACAACCATCAGTCACATGAGAAACCAAAAGGTCATTTCTTAGCATGGGAGCACACACCAGCACTTATCAAATGAGAAACTTTGCCTAAAGACTGTATACTaaggaaaattaaaatatatatctgtAGGGGAATTTTGAGGATAACATGTTCTGTATGTCCAGACACATTGTTTTAGATGAGCGATTAAACTCTTAAAACTTGGCTCTATACTGCAACTCTAACTGACTCAAGCATATCTGTCCACTAAGCTATCTATTCTCAactattaatatattaatattgcgaaaagaagaagaaaaaaaaaatactaacgGACGACAAATTTTACCAGCAAACTTTAggtgaattatatatatatataaaaaaaaaaaatgtataaatgcatctggacaaacagaaaacagcagTACATGGTGACTTTGTCAatcttcaaacttttttttttttttttttaaactaaacagcACATGTTGCACAGAAAAACATTTGGTTAGCAGCAAATCATATTAGCAGCAACATTTTCCATATTTCATTATGTGAGGCTCCCATGTGTTTCATCAGCTGTGAGGCTTCAACTCGAGTGGGCCAAACCAAGACTCTGATTGCTCACAATTCACTCTCTCCGGCTGGCGTCTGTAAGTGGTTCGCCCACTTATATCATCACTCCATGTGCTCCTGCAATGCAGCAGTGCTACGAGCTGAAGAATGAGACGTCTGGtggtgtgtgagagaaaatgtttagggagtgaggaggggggtggggggtgtagCAAAGAGGACAGGGGATCAGGTAAATGAAGGGGAAAGAAGAAAACATGTTGAGATCATtgtcatcacaaaatgtttgAATTAAAATGGTCAACAATGAACAGTTTGACAAACATAGATCCAGGTTCACAAGAGCATTTGGTCAATCTAATGGAAATTTGTCCCTTTGTGGAAGGCGTTAACATTACATGTTTGGCTAGATCAGCTTTGCATGGGACAATCTGCTAACACTAAACTGCCACAAAACAGGCAAGCAACACGGATGTGGCAATGTGTTTTTTGCCTGAAGACGGGACCATTTTAATATTCGTCATAACTGAAAATTGAGCATATCTTACCACAATCTGGTTTAAGAGCCTGTGCCAATGTTTTCAGACTGTACTGAGAGAAACTAGCAATCATCAACTCCACCACTACATCCACTCTAATGAAGACATAGCACACAACCCAATCCATAATGGTTCGTATTTAAGTTTACATATTCACATAAATGATCTAAGtttcaaaccccccccccaccacaaaacaataaaataaaaataaaataaaaatcacacttACCCTGTGTGTAAACAATAAAACCTACACTATGCACTAATTGAAAAGAAATCCTGGCAATATCATacaatatttacaaaaatatacTCTGTAGACAAACACATGTAGATTGTACAGTCAGCCTGCATCCACTTATCTTCTGGTCAGTTACACTTAAATACCTCGGGCTTAATATTTCTACAATGGTAAttaatactgttcaaataaaaaTCTCAAATTATGAAGAACAATGTTTTCAATTTTAGCATTCTATAAAGGACCCAAATTATAGGATATGGTGGAAAGCAGTACCAAATTAAGTCAGTGTGAGAGGTTGTGTTGGTTAAGGGGTACGTTTCCTGACATTTTCGAGCCTTCTATTGACTACAATTTTAAGTAttgttatacatttttttcccccaattaTCACCTAAAAATAGTGTGAACCACCATTATTCTAGGTCCTGAAAAGCACAAACCTCCTGAAGACAAATGTGCCAAAATCCCATCACAAAGAACTAACTTCACTACAACTCTGCTGCCACTTAGAAAAACTCGTTTTTCACTTCAGGTTATTTTCGAAAATTCCTACATACCTGCTGAATAAATTGACATAAAAGCACTAGTCTTCACTCAACTTCCATCtccctttttttattaaattactgTCTACATCACTTTGATTAAATACTTTACCATATGACATTCAGACAGCACAAGTACATGTGCAGTACATTTCTGGGATCTTCCGGTCACTATTCTAGGCATTTTAGGATATTGTGAAATTTGTTACGATACTTTATTGACCTGTCCAATATCATAAAAATCTGCTTGCAGCTCCATAATACCTTCTCCTTTTGTCAAGATAAAGGCAGATACTGCTgtccaaaaaacacaacacaaaacattcaACAGAAGAAATGTGAGGCAACATCTGTTGTGTCGTCATCTACCTCCATCCAGAGAAGTCCCTTTCGCTTACCAGCCTTGCAAACACCAGAGCAAGATGTAGCATACAAACCACTCGTCGTTATTCCTTCTAGAAGCAGCAGCAGGTTTCCTGCTGACGCTCCACCACGCGGGATTCACCTTCAGCTGCATTTAAGGATGGCAGCTGAGCTGCCCCCGTTTCTTCTAATCAACAGCTGGTGATGTTAAGACAGCCAACACGGATGAAAGATGGGCTTCATCACTTTGCAGGTCTACTGGATTCCAGGTGCTGGCAGAACTTCTAAATAAGGATGATGGAAGCAGATtccctctcttctctgcttctggCTGCGGTGATTCTGGAGACGGAGCTCAGCTTCGAGGGTGCGGAGGAGTGAGGAGATCACCTCGATGAAGAACACTTGACTGTATTCTTTATCATACACAAAGTCAATGCTCATTAGGTTGAGACTTCTTCCCCAAAGCTGGCCAACCTTTTCATGACCGTGACCAGTGAATTAATACAACTTAATTCAATCCGGAACAAGACTTAAGACTTCAGTCCATTGCTCTCACAGGCCGTACAACTGGGGACAAGGACCGGGATGCACAGCCAACTGTGGATACCTTGAGGAAAACAGGCGCAGGACAGGACATACAAACCACCACCTTTTCTTCTTTCAGACAAACTGGCGGCATCTTCTCACCGTGTCGTTTCACAGTCTCTACGAGGAATATGTAAACTTGACCTGAATCTTCAAACAGGAGAGAGCTGGATGAATGACTTGAAGAACAGCTGTCTGTATTTCCCTTTTGGTTGACAAGGCTTGAATCTTCAGGTCTTGGAGCTGTTGACTTGAGGAAGGAAAAAACATAACAGAACACTGTTAGCTTTGACATCTGATGGCGCTTACGGAACAGGAACCATGAGGGTGCCTCCCTGATCTGGTTCTGTGACTTCTTGGCCTCTAAATGCTGAGATCCCATGTTATTCCCAAATCTAGACTCTTCACTCACTTTTCTGGGATTATAAATGCAGTGAGATAACTTGGGCATTAGGCTTACCTACAATATTTGTGCAACAGTGTGTGCAGAATCGTGTTTAAAACACTTGTTATCTGAATGTCAGAAATTACATCTGAAATTTGAATCTCGCAGCAGAGTATTCTAGCATGTATCTTTCTATATGGGTCTTCTATAAGCTGTTAGTTTGCTAACTACTCTATCTGAACAGGCCGAGGTGTCTGAAGTGCAGTGCATTGTATATGTTAGGATCCATGATGGTCCCTTAGTGCCTCCCTTCATGGTGCTACCCCCCACCCACTCAGGAGGCAGCCAAAGCAGCTGTGCTGGTTTTGCAGTCTATTTTTTGGGGGTCACAGGGGTAGAAGGTGACACCTAGCCCAGTAAGAAACGCCATACATGAGTCTAAACAAGAGAAGCCCAGATTGGACTGCACATACTGCACCGGCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100379 lncRNA upstream 57737 22924592 ~ 22925155 (+) True G75045
TU100374 lncRNA upstream 62789 22918752 ~ 22920103 (+) True G75042
TU100087 lncRNA upstream 162839 22814044 ~ 22820053 (+) False myh14
TU100074 lncRNA upstream 277589 22704872 ~ 22705303 (+) False LOC120562539
TU100051 lncRNA upstream 356939 22623215 ~ 22625953 (+) True arnt
TU100410 lncRNA downstream 7098 22994420 ~ 22994706 (+) True G75069
TU100419 lncRNA downstream 29485 23016807 ~ 23018595 (+) True G75077
TU100360 lncRNA downstream 92490 23079812 ~ 23083139 (+) False LOC120562293
TU100533 lncRNA downstream 156620 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 340920 23328242 ~ 23328629 (+) True G75192
XM_039807055.1 mRNA upstream 113 22968438 ~ 22982779 (+) True rbfox1l
XM_039807056.1 mRNA upstream 113 22972645 ~ 22982779 (+) False rbfox1l
XM_039804760.1 mRNA upstream 71372 22900089 ~ 22911520 (+) True cnot3a
XM_039806044.1 mRNA upstream 84023 22893099 ~ 22898869 (+) True tfpt
XM_039806043.1 mRNA upstream 95014 22878031 ~ 22887878 (+) True zgc:158689
XM_039806443.1 mRNA downstream 17050 23004372 ~ 23007320 (+) True cdc42ep5
XM_039805889.1 mRNA downstream 41396 23028718 ~ 23036069 (+) True leng9
XM_039805890.1 mRNA downstream 41396 23028718 ~ 23036069 (+) False leng9
XM_039805892.1 mRNA downstream 41792 23029114 ~ 23036069 (+) False leng9
XM_039805891.1 mRNA downstream 41925 23029247 ~ 23036069 (+) False leng9
TU100365 other upstream 80844 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 162839 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 315348 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 359808 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 503803 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 776993 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 779863 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 780911 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 886594 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile