RNA id: TU100585



Basic Information


Item Value
RNA id TU100585
length 2835
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G75199
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23351145 ~ 23354175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTCAAATTTATTGAATTTCAAAAACCTGGGTTTatcaaatttacaaaaaaatcacaaactTTTTATGACATGATAGAATTCTGACCACATTGCTTTAACtggaaattacaaaataaagtgctCAAAGGAAAGCCAGATTTTCTTTTATCTAAAAGACCATTTACTGCATTATATAGTTGCCCAGTTTCTGATGCTTAAAagagaataaataaatcatttttgcACACAATGTATGTACTATATATGTAATGGGTGGGattatacatatactgtatatgtgggaTATGCCAATGGCTGAAGGAACACCTTGTCTTAGCCTGTCTTTCCCACAGACAGGGTAAAACATACTACAGAAATTGTTAGCAATTTACTCCCCAATCATAAGCATTTTTCAGTGAATGGTAATGTTGGATATTACAGATAAATAAatctacatttttgtaaaaaatcaAATACTTTAATGACCTGTGTGTCTTACTATACATTTGGTGAGTGATAGGCAACTTTCAGTGAGATACACATTATACTCAACAGATATAAATATGAGACATACAAATGAGAAAAAACggattactgtttttttttaaacactgtacCCTGGAATGGTTTTACAAATTCTTCTTAGCACTTGCACGGCACCGTGCACTGTTTGCTTTTTAGTCATACAAACAATCAGACAGTGGCATAACTTCCACAGATTGAAGTACCTATCTGTTTACTTTTAGGAAAATTTAAGTCAAAAGCCACTGTATTCCACTGTTACCTAATCTGTTTTAATATAAGAGATCTCACAATGTTACTGTACTGGTATAAACACCACACATTAGTGTACAATATAATTAATGTTTGCTGCTTTGAAAATTTTGACTAGATCTCTATTAactatagggctgggtatcgttcaaaggTTTTTGATACCGGTACCGATGCCAATACTGTGACTTGGATACCGATTCAAAAACgttactttttttcgataccaacattttataaaacaaaaagaaattacaacattacacattacagcacaaatcttttctctctgtctctgtgcgtaacagggtttttcctgcatgcctTTACAACGTGTAATGTTAGACAGTAAAtcccagcattattagatcttagtaGAAGcttgctgcatgcttattggttcactgactctgatgagatttactcctaaGGTATTGACATTGGGTACTTCTACTGGAGCATTGGGAAGCTAGTTGCTTTTGCTGATTCTGTAACTCAAACTGtaacatgtttgtgttgtgtagttAATGCCCACAGTTTTTCTCACAGAACCAGAAGTTACACAAAGTTACATATAGCTAGTATAGTAAATGCTCTTTACTCTTTTACAAAAGGTATTGTTGCCACGAATGCATTACAGCAAGAGCCTCAATACCAGAAGCATAAGAAGTGAAACATTTTAGTGCGGATCATTTACAAAAAAGGCTTGGTACAACCCTTAGTGGAACAACAGAGTAATGCAGCAGTATTGCTGTTAAAACTGGGCCCAAGACCAACAGGTGTTGTCTGTCTTTGATTTTAAACTATAAACAAGTGGATCTTGTTGCCAGAAGTAtgttactgtaaaaaaacaaacacattttatagTCAGTTTGTTATATGTCCTACTCTTTAAGAGTTCGCCCCTCATTTAAaccaaaagaaaggaaaaagtaGTGTATTCAGGGAGTGAAAGTGGACCAAAACTGTCTCACACCAGGACATGACATAAATTGCATTAAAGCAAGTGAAAATAGTTGAGGATATAATGACAATGCCAAAAATAttacaacaaagacacacagagaaatataaacatacagtataattcTACAAAATCTATGGAGTGCAGCATAATTTTGTTCAGGAAAGCAaaggtctgtgtgtctctgcgaaCACTGAGGCTGAAACATGAATGAGCTAAGATGATTACACCAGCTAAGTACTGAAGAAAGGCAATCCCCTCTTTAATCCCAATAGTAAAGACACATTCTTGTACACAAATTCTAAATCACACAGACATGCCATTTTTGCTCTTTGAGCAATGAGAACCATGTTTTTTCCCTTTCCGGCTACAGCAGGCACTCCCATATCCTCAATATGGAACAATGGCGAGGAGGATTTGTCAAAGAAACTGACACCCTTTtgataataaaaatgaaattggaAAAGTGTAATTGTTTGAAAAGTAAAGGATCTCTGCCGCAGTTTACATGGCCATAATCGGGACGCTGAGATAGCAAAATAATTCCTCCTGCCTCTTGGCATCTCTCGGAGGTGAGCTGGCCTGCTGCAGCAAAAAATAACTGCCTCTTCTCTCCACACTTAACCACCAACTCCACTGTCTTTCTCTCCTCAGTGTCTAAACCTGTAGGAGATGGGCAGGAGCAGGTTATTTTTCTTCAGGGCCTGCACCCTGCTAAGTGTCTCCTCATCCAGGGCAGTGTAGCAGCGCCGGGCATAGTCCAGTAGCTTCTCCTTGGATGGATCAAACTCGCCCACCTCTGCCACCTTCTCTGGGGCCACTAGTAGCAGTTCAGCAATGGGTGTGGTGGAAGCCACCGTATTGCGGTCCACACCATGGATTTGGAAGGCTTTCGACATGTTTTTCAGACGCTGGGGCTCGGAAGACCCGCCTCCTTTTTAATTGATGTCTGTTGCTGTTAATGGTATCTTGCATTACATCTTCCCCTGATATCATTTCCTCCTCCTCGAGGTAACCGTCCTGTTCCAAGTACTCATCAGATTCTCCCAAGAGTGAAAGTGAATCTGAtgacaacataaaaaaatccCACAACATAAGTTTTTTCCCCTCCAATTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU100582 lncRNA upstream 378 23346840 ~ 23350767 (+) True G75197
TU100579 lncRNA upstream 8468 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA upstream 8468 23340092 ~ 23342677 (+) True G75196
XR_005639637.1 lncRNA upstream 18389 23331840 ~ 23332756 (+) True LOC120561704
TU100574 lncRNA upstream 22516 23328242 ~ 23328629 (+) True G75192
TU100617 lncRNA downstream 82921 23437096 ~ 23441226 (+) True G75227
TU100711 lncRNA downstream 140038 23494213 ~ 23494477 (+) True G75301
TU100720 lncRNA downstream 214021 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA downstream 214021 23568196 ~ 23569856 (+) False trpv6
XR_005639669.1 lncRNA downstream 277241 23631416 ~ 23633834 (+) True LOC120561968
XM_039806973.1 mRNA upstream 28384 23304312 ~ 23322761 (+) True cacng8b
XM_039805227.1 mRNA downstream 24430 23378605 ~ 23382673 (+) True rcvrn2
XM_039805226.1 mRNA downstream 38824 23392999 ~ 23395671 (+) False isoc2
XM_039805225.1 mRNA downstream 38828 23393003 ~ 23395671 (+) True isoc2
XM_039805932.1 mRNA downstream 41759 23395934 ~ 23401710 (+) True foxj2
XM_039806510.1 mRNA downstream 66172 23420347 ~ 23426645 (+) True sbk3
TU100365 other upstream 449097 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 531092 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 683601 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 728061 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 136950 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 410140 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 413010 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 414058 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 519741 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile


TU100585 Expression in all Baseline Samples

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TU100585 Expression in each Bioproject

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TU100585 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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