RNA id: TU100617


Basic Information

Item Value
RNA id TU100617
length 1892
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G75227
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23437096 ~ 23441226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatatctttatgtttttctttgcaTATACATTTCCATATTCATATACAGTTTGAATAACAAGTAACATTTGGGAGAGATGCATATAATttaaacagtaaacaaacacTGACAGACATTGTTTAGGGCTTTACACTCACACAGTCTCTGTGTTCCAATCAAAATCTATCGTCACACCACTTGTCAGCTGTCACAACACACGTGCATGTGATACCAGTGCAACATAAGCCATCTCTCTGTACATGACAATATCACAACAAAACACTGCATCAAACACAGACTAGCTTGGTCCCACGTTGCATTTGCCTGCATCAGAATACCATTAACATTACATCTTAACATAGAATTGAAGTTCACAGTTAAAACCCAGTTTGTACAGTACAACATGCTGTGTGATTGAGGTCTGCGACCTGACCAccttctcaaaaaaaaaagaattaagcAGATGAATGTCTCCCCAGACTGACTGAACAGTGCAGAAACACAGACCTATTCATTGAGGAGAGAGGTCGTGACCTAAATGACTCACCAGTCGCAGCTTTAACAGCTGGGCTGAGTAGAGATGACATAACATGGACTAAATCATTTCTGTTTCCCCCTTGAGGCAAAGATAAAAGCACTTGATGCCTCTCTTTCTTTCGCTAACACCCATACCGCATCAAACATTCCTAATTCCCTGTCTCTTTGTACTGCTTTACAGTTAAAACAATGCACACAGTGCCAAGGACCCATCCCCCGTGAAATATGTGTTCAACAGCTGCAGCTCAATTTGAAATgtcctctcaaattgatgccgCAGAGCCACTAGAGAGCACAACTAGTCTGTAAATCAGCTTCTTTCAAGTAAAAATCATTTTGTGGTAAACTTCACCTTAACGTAAGTCGAATATTTGAACAATCCCTGTGTTAAATGCAGACTTTATGCATTACTAACTACATAGACAGAGTAGACTGCCAGTCAGTGCATATAGTCAGTCCCACTGCTGGGGACTTGAGAGATCAAATAAGCTACAGTACATACAGATGACAACACCAATGACAAGAATTACAAACTACCgacaatatatacatttaaaataaatattctcTGTACAGAAATTCATTCATtatatttaatttgatttcaTCAATCAGATGTTTCTGATTATGTCTCCCTTGCTCATATTTCTATTGTGTATACTCTACGATAGAAATcagcaaataaaacattaagacgaggacaaaaaagggaaaaagctgAATTCAAACGGGAAAATGGAAACTATAGAGCTAGATTGGATATacagaaggagagagtgaaGAGGATCCCCAAGTATGATGGGGGGCGGGCATAGCGTGATGGCCTATAGTTGTAAATCTTTCTAATTAAGACTGGATTATGAGGTCAGGGTGTATCTCTGGCTAAGAGCAAAAGCCATGAGGGACTGaactaaattaaaacaaactagCACAGGGGGTTACCCTGCTTGGCAGGGAGAGATACGGGACCCCATAACGGGGGGAAACAAAAGTAGCAAAATGTGCTGCATTGTATACAGAGAGATAAGTGGGAGACAAACAAAATGTATCCCTCCTCACTTCGTGGATACGGAGTCAAAGTCTCCCCACAGGTCCGAGCTGGCTGTGCTGGTGGGGTCGGAGGGAGCTGCTGAGTTGGAGTTACTGGTGTCCAGATCTAGCAAAAAAACCGGTGTCAGTTCCTCCTGCAGATGGTTGTGTGTTATGATTGGTAGATCTGGACGAAGGAGGTGGGGCTAACTTGCCCCCAGGAGGAGGTGGAAGAAGCCCAAAGCCACCTGAACTCTGCGGGCGGGACCTGTCCTTCTTTTTTGATTGCTGGAAAAGGTATAATTAGGAGAACCCAAAACTCAGTGAGTGTGTGGGTTTATAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100585 lncRNA upstream 82921 23351145 ~ 23354175 (+) True G75199
TU100582 lncRNA upstream 86329 23346840 ~ 23350767 (+) True G75197
TU100579 lncRNA upstream 94419 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA upstream 94419 23340092 ~ 23342677 (+) True G75196
XR_005639637.1 lncRNA upstream 104340 23331840 ~ 23332756 (+) True LOC120561704
TU100711 lncRNA downstream 52987 23494213 ~ 23494477 (+) True G75301
TU100720 lncRNA downstream 126970 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA downstream 126970 23568196 ~ 23569856 (+) False trpv6
XR_005639669.1 lncRNA downstream 190190 23631416 ~ 23633834 (+) True LOC120561968
TU100761 lncRNA downstream 207101 23648327 ~ 23651493 (+) False casp2
XM_039806512.1 mRNA upstream 52 23433649 ~ 23437044 (+) True mfap5
XM_039806513.1 mRNA upstream 52 23433697 ~ 23437044 (+) False mfap5
XM_039806510.1 mRNA upstream 10451 23420347 ~ 23426645 (+) True sbk3
XM_039805932.1 mRNA upstream 35386 23395934 ~ 23401710 (+) True foxj2
XM_039805226.1 mRNA upstream 41425 23392999 ~ 23395671 (+) False isoc2
XM_039806414.1 mRNA downstream 49966 23491192 ~ 23494034 (+) False LOC120562612
XM_039806425.1 mRNA downstream 57563 23498789 ~ 23508665 (+) True slc2a3b
XM_039806424.1 mRNA downstream 58250 23499476 ~ 23508665 (+) False slc2a3b
XM_039806426.1 mRNA downstream 58259 23499485 ~ 23508665 (+) False slc2a3b
XM_039806428.1 mRNA downstream 58303 23499529 ~ 23508665 (+) False slc2a3b
TU100365 other upstream 535048 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 617043 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 769552 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 814012 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 49899 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 323089 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 325959 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 327007 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 432690 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile