RNA id: TU100710


Basic Information

Item Value
RNA id TU100710
length 578
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC120562612
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23491125 ~ 23494034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttttttttcccctttttttttttttttttttttttttttcttgctgggGGGGTGGGCTCATAAAGATGTCTGACACTTTTGATGAGAAGATCAAGAACTACAGGACGGCTCCTTTTGACGCCCGATTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTACCTGGACTTCCACAGGTGCAACAAGGCCCTGTCAGCCAAAGACCAGGATGTGGCTCCCTGTGATTGGTACCAGAGGGTTTACAAGAGCCTCTGTCCCATGAGCTGGGTCGGCAAATGGGACGAGCAGATAGAGAATGGAAGTTTCCCGGGAAAGATCTAAAATCGGCAGCCGTTATTGATCAGGACAGTTCACTGCTAGACATGCTGTTGCACCTTTACCTCTGTAGTGTGCCTCATGACATCTTCAAAACAGCTAACAAACCATCATCAATAATATTAACTGTTATTAACTTTAAATATAAACACGCACAACTTTTTACCTTGCATGTTAAGGTCTGAAGTTTTTTCTCCATCTATTGTAAAGTACTCTTCGGCTTTGTTTGATCAATAAATACTGTGCGGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100617 lncRNA upstream 49899 23437096 ~ 23441226 (+) True G75227
TU100585 lncRNA upstream 136950 23351145 ~ 23354175 (+) True G75199
TU100582 lncRNA upstream 140358 23346840 ~ 23350767 (+) True G75197
TU100579 lncRNA upstream 148448 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA upstream 148448 23340092 ~ 23342677 (+) True G75196
TU100711 lncRNA downstream 190 23494213 ~ 23494477 (+) True G75301
TU100720 lncRNA downstream 74173 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA downstream 74173 23568196 ~ 23569856 (+) False trpv6
XR_005639669.1 lncRNA downstream 137393 23631416 ~ 23633834 (+) True LOC120561968
TU100761 lncRNA downstream 154304 23648327 ~ 23651493 (+) False casp2
XM_039806512.1 mRNA upstream 54081 23433649 ~ 23437044 (+) True mfap5
XM_039806513.1 mRNA upstream 54081 23433697 ~ 23437044 (+) False mfap5
XM_039806510.1 mRNA upstream 64480 23420347 ~ 23426645 (+) True sbk3
XM_039805932.1 mRNA upstream 89415 23395934 ~ 23401710 (+) True foxj2
XM_039805226.1 mRNA upstream 95454 23392999 ~ 23395671 (+) False isoc2
XM_039806425.1 mRNA downstream 4766 23498789 ~ 23508665 (+) True slc2a3b
XM_039806424.1 mRNA downstream 5453 23499476 ~ 23508665 (+) False slc2a3b
XM_039806426.1 mRNA downstream 5462 23499485 ~ 23508665 (+) False slc2a3b
XM_039806428.1 mRNA downstream 5506 23499529 ~ 23508665 (+) False slc2a3b
XM_039805777.1 mRNA downstream 18532 23512555 ~ 23556483 (+) True ephb6
TU100365 other upstream 589077 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 671072 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 823581 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 868041 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 868041 22616972 ~ 22623084 (+) False arnt
XR_005639923.1 other downstream 270292 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 273162 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 274210 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 379893 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 537367 24031390 ~ 24032445 (+) False atn1

Expression Profile