RNA id: TU100761


Basic Information

Item Value
RNA id TU100761
length 3036
lncRNA type sense_over
GC content 0.41
exon number 2
gene id casp2
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23641555 ~ 23651496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGAGGGAAAAAAGGTTAGCTAGTTTTAGCTAAATTGAAACTTTCTTGTCTTCCAGAGGAGATGGACTGTGGAGTCGAGCAGATAGATGGGCCAGCGAGGACCTGCTCACCATGCTGTGAACAGCTGGATGCTGGAAGGGAAGGACAGGGGGATGCACACTCTAGACAGAGAGGGGACATGGGGAGGCCCAGGATTAAACTGCCCCAGCGGTCTGACATGCTCTGTGGCTTTGCATCTCTCAAAGGTCAGAGAATTTGTAAGTCTGTCCCTTTTGATTTTCTGGGGTGGATTTATGTATCaaatgtgttgtttaacagaagtgtaaaaaacaaaacaataaaaatgaatgaggcAGTAGAGATGTGCAGTAATCCATGCAATGCAAAAGAAGTTGACATTTCAACCAATCAAAAATAAATCAGTGTGTGGACtatctgccttttttttctctgcagatTTCGTCCTGTACCAAACTATGGTTTTAATGTGCACCTGTTTTCTGCCGGTATTGCATGCAGCAATGCACAGGAACTAACTTCAACAAAACCAATATGAGAGGATATTGGAGGCTTTAAAAGGAAATCCACCGATTTGACACATCAAAGTCAGTTTACAGTGCTTGGAAAGTACTACTGAATTTGTGAAATGTTGTATAAAGCCTTCTGTGACTAAAGAGGGAGCTGTGCGAAAGTCTGAGAAGTTGCCTCAAGTTCAGCTTGGAGGTGAAAATGAcaagttttaaaataaaaaatgtgaggttaccagacctctgtagccttcttctcatctctgcttgagACTTGAGGCTATACTCGCCACTACAAGCATAACATACCCGATCTCCAACCAAACCGTAGCATCATGGTGTCCATATTGGTGGACTGTCACTTTTAAGAACTAAAGTGCCAGGGGTTAAAATTGTTGTGGTTGATTCCTGTCAGCTGTGCCACCCTTTCCGTCTGAGCTTAGACTTCTTTTCCTCGCCAGCTATCACGGTTTTAGAtgttaagataattttttgacCAGTAGATAGTTTCGGTTTCCAGTCATGTAAATAGCAGACACCATCTTGGATCTGTCTCCCTGCATCTCATCTGGATGTATTAAGCCTGCATTGTTTGATCTCTTGCTCCTCAAGGCACAGCAGCCATGCGGAACACCAAGAGAGGATCCTGGTTCATCCAGGAACTTAACACAACACTGCGCCTCCaagccagagacacacaccttGCAGACATCATGGTGCAGGTCAACCGGCGTATTAAGGAGCGGGAGGGTTATGCTCCTGGCACCGCCCACCATCGCTGCAAAGAGATGTCGGAGTTCACCAGCTCATTGTGCAAAGACCTCTACCTTTTCCCCAAGTACCAGCCCCAGTAttgagacaaacacacacacacaaacacacacaaacagcattcCTTGCATTTAAGGTGCACACAATGGTTCATTCCACTCTAATTTCTGCCACACACTTACACATTCCTCTGTTACAGCTTCACTTCCAAACAGAGgatttattcattcatattttcTGTGTAAATACTGCCTcctcagacatacacacacttgtgcATACACTCACCGAAATCttggaaagaaaaaaggagcaAGCTTATGTTAATCTACATGTACTCAGAAATGGGCAACACATTAGCATACAACTTACTCCCGTGTCTGTGTCAATGCCAGTTAGAGGGTTTAGTTGATAATCCTTTTTAGACAAAGACAGAATcgtattttattgttttcctactGCACAGCTACAGTACTTTTGAGGTTTCACTCTCTTTTTAAGATGTATTTTGTACACAGATCTATTTTTGTGGCTTTATTTTGTATGAAATTGTTTTTATGAGCATTTTAAGCCCATTCTCTTTATTTGTATGTTAGTAAGTAAGTTTGTTATAATTTGTGACCATTTCTTGTTTTTAGTATAGTGCCAGGCAGGGGGCAGCACAGCAAAGACAAATGCATTTTATCGTCTCTCTTTCATAAATGTTCATGTTTTTCACTTCAAATTGATCATCACAATGATGATTAAACGGTATTTTCTCTGCAacgggttttattttttttaaggacaAAAACCTACAGGGCAGCTTCACAAGACCTTGAATTGTttcagtcatttattttttcgCTTTCATTTGTGGATGTTCAATCaggaacatttttcttttaaaccttAAATTCTATAAAAAGGGCATCCACTGTAAATTTCACTTCATATCAGCTGTGTTACTGTAGATCTGTCCCTGTCAGAGTGGGCTGCCTGGGGAATGTGGTGCTACTTGTGGGGTCATACATCTACAGTGTGAACTCTGACCTTTAGGCTAACTCGGACTCCTAATAGTGTTTCTCCCAATGTGGGAGCTGCACATTTAGTTAGTCTCTCTACAGTTTTTGTGGTATTTTACTGTATCTGATACAGTAcagataaaaatgtattttgtatgtcttCCATAAACAATATGCAGTTTTCTACAGCAGCCTGTGCCATGTGAGGATAATCTATTAGATAAATTTATGACCATGGAGCTTTTATTGTATCTTTTTTGGCACCCCCCACACAAGAGAAAACCAGTTCTCAAGGCTGTGGAAGCATTAGGTTTCCCAGAAAAGCCCTGATCAGGCAAATTGTGTTTTGTTACTACAGCGTtgtagtcagtccctccaggatttcgcagcATATTTGGGGGATCGTTGCAGCCCAAAATGCCCGATTTTGCTGGAGCAAATTGTAAAAAATTGCAATGAAAGTTGCAAGGTCGCACTACGAGCACGCACAGATCCTGGCCTGGAAGGTGATCACCCTTCTTATCCTTTTGAtttttgaaattatttaaaCACAAACATTGGAGAAGTATAAAAGGGTTACTCTCCTGCCATGTGAGACGGTTTGAAGGTTGATATTTGCTGCCAAGCTCTGCAGAGTAGCAGGGTTGGGGGGGCCAGGAGAGCTTTTATTTCTGTCAACACCAATGACTGCCAAATGTTCTATACAATAAACcaaccatgttttttttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639669.1 lncRNA upstream 14493 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 77084 23568196 ~ 23571243 (+) False trpv6
TU100722 lncRNA upstream 78471 23568196 ~ 23569856 (+) False trpv6
TU100711 lncRNA upstream 153850 23494213 ~ 23494477 (+) True G75301
TU100617 lncRNA upstream 207101 23437096 ~ 23441226 (+) True G75227
TU100857 lncRNA downstream 116747 23768240 ~ 23813408 (+) True LOC120563204
TU100883 lncRNA downstream 231684 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 292000 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 320834 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 320834 23972327 ~ 23973124 (+) False G75493
XM_039804699.1 mRNA upstream 39831 23601102 ~ 23608496 (+) True phc1
XM_039804700.1 mRNA upstream 39831 23601103 ~ 23608496 (+) False phc1
XM_039804697.1 mRNA upstream 48325 23593861 ~ 23600002 (+) True m6pr
XM_039805778.1 mRNA upstream 80079 23560848 ~ 23568248 (+) True trpv6
XM_039805310.1 mRNA downstream 1075 23652568 ~ 23684765 (+) False clcn1b
XM_039805312.1 mRNA downstream 1257 23652750 ~ 23684905 (+) True clcn1b
XM_039805311.1 mRNA downstream 1258 23652751 ~ 23684905 (+) False clcn1b
XM_039805247.1 mRNA downstream 68368 23719861 ~ 23736431 (+) True zyx
XM_039805244.1 mRNA downstream 68636 23720129 ~ 23736431 (+) False zyx
TU100710 other upstream 154304 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 746279 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 828274 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 980783 22660479 ~ 22667544 (+) False LOC120562537
TU100052 other upstream 1025243 22616972 ~ 22623084 (+) False arnt
XR_005639923.1 other downstream 112822 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 115692 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 116740 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 222423 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 379897 24031390 ~ 24032445 (+) False atn1

Expression Profile