RNA id: XM_039807053.1


Basic Information

Item Value
RNA id XM_039807053.1
length 3101
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120563047
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23873909 ~ 23879415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acCGCACTGTCGTTACGAGTCCAAGTGGAGAAGGCAGGAGGAGAGACGCATTATTGCAGTAGCTTACAGTACCACAGCACTTCACACGGGCGAAACTACCGCACTTCCCACAAGACGCACCTCTGTCTGCGCagggagaaagcgagagagaggTGGGGGTGACAGAATCAAAGACGGACAACTGATTTCTCATGACTGGACTTTTTATCCCATAATTTTGAAATTGCACGCATTTGCAAGTAGCTTAGAAAAGGCAACTCAACAACCAGCCAATCAGTGCTGCGCTGTAGCATCCAGGAGCTCTATAAGGACTCAGCATCGCCCGGAGGAGCTGCATGCAGCCCTGCAGGAATATGAGCATCCGTGGATTTCTCTTGAATGGATTACTAATTTAGAAGTACTTTTCTCTTCTATCGCATCTCCTTCACTTCCTGCTCTCCAGTCCGGTCACACAGTGAATTATCGCCCGGCCCGTTTACGTGTGTCGGTATATTGCGGTACTTTGCTGACGACTTGCAATATAAATGCATCGCTAGAAGATCGGCTCCACTGCGCCAAGACCCTCTGCCTCTGTTTACTGTTAGCGCGGCACTTCAGTAACTCTGCTTATTGAAAATTTGGACTTTCGTTTGGACCAGTGACTAGAAATTCTCGTCtcgttttttctgttttcttgcagttttttttctcgCGTTGTACTTCAGACCCTCCCTCTCCACCTCACAGCCCTCACCCCCTCCCCCGCTGCCCGTGAGTCAGTTCAAACAGCTGCATAGAAGATGTCTGCCCCAGATGCCGCTGCTCCAGGTGGAGCCCCGGGTGCTCCAGGAGCCCCTGGTGCAGATGGAGCCCCAGGTGGCGCACCTCCTGGCCCACCCAACACTTCCAGCAACCGCAGGCTACAGCAGACACAGGCCCAAGTCGAGGAGGTGGTGGATATCATGCGAGTGAATGTGGACAAGGTTTTGGAAAGGGACCAGAAGCTTTCAGAGCTGGATGACAGAGCGGACGCTCTCCAAGCCGGAGCCTCCCAGTTTGAAAGCTGTGCAGCTAAGCTAAAGAACAAGTACTGGTGGAAGAACTGCAAGATGATGATCATGATGGGTATCATCGGAGTCATTGTGGTTGGAATAATATTCTTGTACTTCTTCTACTGAGCTCAGCCCATCAATACAGATGGATATGGACTTGAGAATGAtatgaaagggaagagaaaaaaagatacCCAAGCGCCACTCCTCCCCTTTTATccatcctctccttcctctctacACAGTCTTCCATCAAACCATCTTGCACTTAAACGTGACAGTAGTATGTATAGGTGTGTCTGCTCTCTTtgtccccctctccctcccttcttgtTGCTTTCTTCCACTGTTTTAagtctcactcactctctcctgTCTGCACCTCATGTATTATTGAAGGACGCAGCAGGCGGagtgaaagaggaagaaaggaagggaaggagggagagagaaaattcTTGTGACACGGAAACACACGGGGCTAAGTCCTCTGAACGATACCATGGGGGGAGATGTACAATGTACAGAATGTGTGCAGGGAGATTGATCAAGAGTTTGCAGTCCTTTCTACCACAGATATACGCCAAAGCTTGTTGATTTTACCTTTTTTGAGAATCCTACATTTGTAATTGATACTGACATGCCTAACTAACACAATTCTTCTCTCACAACTGCTACCATCATTGCTACTTACTAATACAAGGTCATGTTAGATTAAAATTAGGAgcatttttgttgtgtgtgtgtattggtgaTCCAAAGCATTGTAGCCAGTAGCTTTTTCTGAGTTTAGCTGATAGGCTTTTATTATTGATAACTCTTTTGTTTCATTCTTGCCTAACTTTCTGCAACATTCAGTAATGAcaatgagagaaaaagagaaagagactgtGTGCGAGTATAAGGAAAGGAAGAAGAGAGTCACGGAAAAGTAGTAAGCATTCTTTCCTGGTATTAATAAGACCAACTTCCTAAATGCTCATTTTGGACTGATAAGCAATTATTGATAAAGTAGTCGTATAACTATGCTTCATTTTACCTTGGCTTTTGTACAACAGGTGGGGGCAAAATAGTAGTGTTATGCTTAGTGGCATAGGGATATGCacagcaaaacaaacaacaaataacagACAATCTACACGTGAACTGACCAGAGGAAGGTCTCTTAACTCTGACTTGGACAGAGTCACAGCCATAGACAGATGAATGTGGAACATcacatttattgtaaaataaaacttgttttggaaGTTGTGCAGACAAAGTGTTTGTTTGATTGTTGTTTAAGTTGGCCTGATCttcaaaaagcaggaaaatgggAGAAAGGACATGATTTAGAAACCCAGAGCCAACTGGCCCTCCCATTCCCATCCCCTTCAGTCACATTAAAACAGACTCCCCTGTCACCTGCAGTATGGTAATGGCCAAAATGAGGTGTTTGTTTTTAACTTGCATGGCAAACCGTGTCCATAGTTTTGCCTATTTGTGTGATCTGTGTATCTGCCATTTCTGAATCTAACTGCcgattgtacattttatttggtTAGTGGTTTAAACGACTTGTGTATAATGTCTTTCTGTTCTGATAATTACTGCTTATGCAATGCAATGAAATGATGCTCAAGAGTTTGCCAAATGGTGTTCATTTCAATTGCTTTTGAGATAAAACATTCAGAGATGGCAAACAACTGCTACTATAATGAACTGTTATAAACATGTAGTAGATATAACAATAGTACACATAGGTCAGATTATGATCCTGAAAATGTGTTTACAAattctttcagttttttttcggGGGGTTGTTCGAtataaaaaaaagcttattttCCTTTCTTCGGACAGATTTTGAGGGTTGATAAAATTGAGATGCATACATGTAGCAGTTAGTTATAATTATCTGATGATATTGTGCAGCAATATTATTAGGTAATTATCACCATATAAGATATGAGAACATGTTTTGTGATTTACAACTTGGAAATGCAGTAAACTAATGCAAATGGATTTGCGAAAACAAATGCATGCTTACCACTTTTGCTGATGCCAATAAAGAAACCATCAAAAGAA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13504 VAMP2; vesicle-associated membrane protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100857 lncRNA upstream 60501 23768240 ~ 23813408 (+) True LOC120563204
TU100761 lncRNA upstream 222416 23648327 ~ 23651493 (+) False casp2
XR_005639669.1 lncRNA upstream 240075 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 302666 23568196 ~ 23571243 (+) False trpv6
TU100883 lncRNA downstream 3762 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 64078 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 92912 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 92912 23972327 ~ 23973124 (+) False G75493
TU101012 lncRNA downstream 148468 24027883 ~ 24031339 (+) True G75517
XM_039804693.1 mRNA upstream 2195 23869637 ~ 23871714 (+) True mrpl51
XM_039805811.1 mRNA upstream 15631 23844077 ~ 23858278 (+) True plekhg6
XM_039805812.1 mRNA upstream 15631 23844077 ~ 23858278 (+) False plekhg6
XM_039805813.1 mRNA upstream 29950 23836781 ~ 23843959 (+) True tnfrsf1a
XM_039805749.1 mRNA downstream 42355 23921770 ~ 23937821 (+) True LOC120562185
XM_039804861.1 mRNA downstream 119020 23998435 ~ 24002544 (+) True wnt4b
XM_039806553.1 mRNA downstream 131468 24010883 ~ 24019095 (+) True mlf2
XM_039806552.1 mRNA downstream 140480 24019895 ~ 24025854 (+) True LOC120562699
XM_039806551.1 mRNA downstream 140480 24019895 ~ 24025854 (+) False LOC120562699
XR_005639922.1 other upstream 105332 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 106442 23767185 ~ 23767467 (+) True LOC120563206
XR_005639923.1 other upstream 109264 23764315 ~ 23764645 (+) True LOC120563205
TU100710 other upstream 379886 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 971861 22900144 ~ 22902048 (+) False cnot3a
TU101013 other downstream 151975 24031390 ~ 24032445 (+) False atn1
XR_005639925.1 other downstream 174857 24054272 ~ 24054328 (+) True LOC120563208
TU101207 other downstream 555724 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 555724 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 1035839 24915254 ~ 24989119 (+) False LOC120561858

Expression Profile