RNA id: TU101012



Basic Information


Item Value
RNA id TU101012
length 732
lncRNA type intronic
GC content 0.45
exon number 4
gene id G75517
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24027883 ~ 24031339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCATCAATTTGTAGTCTTCAGTTGGCacccctgtttttttttcctgcaacgAATAGAAATAGATTTCTTCTGCATTATTATTATCGGAGCCCGTTGCAATATGAGCCAGCACAAGCCTCTGTTGACAGACGCCTGGGCTCTGAGGTGTGCGTGTCAGCGTGCAACATAAAACgacaaaacagagagagaaagggagagtgaGAGCACGCATCGCTGGATATTATAGGTTTTGGTTGCTCTCATGGTGTAACACACAGCCCAGTCAGTAAGCAACAGGAACCAGTTCAGTCCCTGCAATGGCTTGCGTTTTAAAATGAGCgttttaaagaagaaataatgaaaacacggacacacaaagAATCGATGCCCATGCGCAGTGGGCGACGGCGGGGGGCGAGTGAGGAGAGAAGGGGCAGACGCCCGCATCCCAGCCCCACTCGCCCTGAACGCAATGATAGACAGACGAGGTGCTGGTGAGGAATTGGCTGGAAATCGCTTCAGTCGCCGATCACAAGGGCATGATTCATCAGAGAGTGAGGGGGAGGAACTTGTTTCTCCTCCAAAGAGGCAGAAAGTTCAGGTTTGTGTTACATTTCATTAACCTGTTATATAAAGACTAATTAAAAAGCTTTGATTCGGCTAAATCATCCAAAAGGCACTGTCTAAGTAGTAAGAGTTATATTCTTTGCTTTTACAATATTGCCACGTTcacaaaattttaatttttaccTC

Function


GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100984 lncRNA upstream 52149 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA upstream 54759 23972327 ~ 23973124 (+) False G75493
TU100973 lncRNA upstream 79480 23943493 ~ 23948403 (+) True G75483
TU100883 lncRNA upstream 143252 23883177 ~ 23884631 (+) True G75427
TU100857 lncRNA upstream 214475 23768240 ~ 23813408 (+) True LOC120563204
TU101023 lncRNA downstream 17586 24048925 ~ 24052956 (+) True G75523
TU101028 lncRNA downstream 42050 24073389 ~ 24073644 (+) False lpcat3
TU101106 lncRNA downstream 87978 24119317 ~ 24122009 (+) True G75582
TU101108 lncRNA downstream 90688 24122027 ~ 24125081 (+) True G75583
TU101154 lncRNA downstream 184801 24216140 ~ 24216569 (+) True G75611
XM_039806552.1 mRNA upstream 2029 24019895 ~ 24025854 (+) True LOC120562699
XM_039806551.1 mRNA upstream 2029 24019895 ~ 24025854 (+) False LOC120562699
XM_039806553.1 mRNA upstream 8788 24010883 ~ 24019095 (+) True mlf2
XM_039804861.1 mRNA upstream 25339 23998435 ~ 24002544 (+) True wnt4b
XM_039805749.1 mRNA upstream 90062 23921770 ~ 23937821 (+) True LOC120562185
XM_039806772.1 mRNA downstream 25098 24056437 ~ 24073698 (+) True lpcat3
XM_039806773.1 mRNA downstream 25098 24056437 ~ 24073698 (+) False lpcat3
XM_039806547.1 mRNA downstream 42744 24074083 ~ 24098119 (+) True clstn3
XM_039806526.1 mRNA downstream 68482 24099821 ~ 24113212 (+) False pex5
XM_039806525.1 mRNA downstream 68505 24099844 ~ 24113212 (+) False pex5
TU100879 other upstream 148468 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 259306 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 260416 23767185 ~ 23767467 (+) True LOC120563206
XR_005639923.1 other upstream 263238 23764315 ~ 23764645 (+) True LOC120563205
TU100710 other upstream 533860 23491125 ~ 23494023 (+) True LOC120562612
TU101013 other downstream 51 24031390 ~ 24032445 (+) False atn1
XR_005639925.1 other downstream 22933 24054272 ~ 24054328 (+) True LOC120563208
TU101207 other downstream 403800 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 403800 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 883915 24915254 ~ 24989119 (+) False LOC120561858

Expression Profile