RNA id: XM_039806847.1


Basic Information

Item Value
RNA id XM_039806847.1
length 4789
RNA type mRNA
GC content 0.52
exon number 19
gene id grik5
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24806289 ~ 24885373 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCGGCTCTGCCAGCACTGCTGCTGTCAATACACTTCCTTTCCTTCCTGCTAGTCACCATGCCTCCACGCTCCCTCAGTCAGGCCCCTTTGCTCTCCTCCGTTCGAATGGCGGCAATCCTGGATGACCAGTCTGTGTGTGGGCGTGGGGAGCGTTTGGCGCTGGCCCTGGCCAGGGAGAACATCAACAGCGTGATGGAGGGTCCGTCCCGAGCCCGAGTGGAGGTGGACATATACGAGCTGCAAAAAGACTCCCAGTACGACACTACTGACACCATGTGTCAGATTCTACCCAAAGGCGTCGTTTCTGTGATAGGTCCCGCCTCCAGCCCTGCCTCTGGCTCTACTGTCAGTCATATATGTGGAGAGAAGGAGATCCCTCATGTGAAGATTGGTCCGGAGGAAACTCCCCGATTGCCATACCTGCGTTTTGCCTCTGTCACTCTGTACCCTAGCAACGAGGACCTGAGCCTGGCCATAGAAGCCATCTTGCGCTCGTTCAGTTACCCCTCAGCCAGCCTGGTCTGTGCCAAGGCTGAGTGCCTGCTGAGATTGGAGGAACTGGTCCGCCGCTTTCTCATCTCTCGGGAGACGCTGTCAATCAGGATGCTGGATGACAACCTGGACCCTACACCACTGCTGAAGGAGATCCGTGATGACAAAGTGGCCACCATCATCATTGACGCTAACGCTTCTATCTCTTATCTCATCCTCAAGAAGGCATCAGAGCTGGGGATGACATCGGCATTTTACAAGTACATCCTCACCACCATGGACTTCCCACTCCTGAGACTGGATGATATAGTGGATGAGCAGTCCAACATTGTGGGTTTCTCCATGTTTAACACCACCCATCCCTTCTATTTGGAGTTCATCAGGAGCCTCAACCTGTCTTGGAGGGAGGGATGTGACCTAACGTACCCCGGCCCTGCGCTCTCGTCAGCGCTGATGTTTGATGCGGTGCATGTGGTGGTGGGGGCGGTAAGGGAATTGAACCGCAGTCAGGAAATCGGTGTGAAGCCACTCAGCTGCACCTCACCTCAGATCTGGCAACACGGGACCAGTCTTATGAACTACCTGCGCATGGTGGAGTATGATGGTCTGACAGGCCGCGTGGAGTTTAACAGCAAAGGTCAGAGGACCAACTACACCCTGCGGATCCTGGAGAAACACAGAGGAGGCCACAAAGAGATCGGTGTCTGGTACTCCAACAACACCCTGGCAATGAACTCCACTAGCTTGGATATCAATGTCTCAGAGACTCTGGCAAACAAGACACTCATTGTCACCACCATACTGGAGAGCCCATATGTGATGCGCAGAGACAACTACCAGGACTTCCAGGGCAACGACCAGTATGAGGGCTTCTGTGTCGACATGCTGAAGGAGCTCGCAGACAGCTTAAAATTCTCCTTCAAGATCAAGCTGGTGGATGATGGGCTGTATGGAGCTCCAGAGCCCAATGGCTCTTGGACTGGCATGGTTGGAGAGCTCATCAACAGGAAAGCAGACCTGGCCGTAGCAGGCTTCACCATcacatcagagagagagaaggttaTCGACTTCTCTAAGCCGTTCATGACCCTGGGGATCAGCATCTTGTACCGAGTTCAACTGAGTCGGAAGCCGGGATACTTCTCCTTCCTCGATCCCTTCTCTCCAGCTGTTTGGCTCTTCATGCTGCTCGCCTACCTGGCTGTCAGCTGTGTGCTCTTCCTGGCTGCAAGGCTGAGCCCCTATGAGTGGTACAACCCTCACCCGTGTCTGCGAGATCGCAGGGACATGGTGGAGAACCAGTACACGCTGGGAAACAGCCTGTGGTTCCCTATTGGCGGCTTCATGCAGCAGGGATCAGAGATAATGCCCAGAGCCCTGTCCACCAGATGTGTTAGTGGGGTGTGGTGGGCATTCACCCTGATCATCATCTCCTCCTACACGGCTAACTTGGCAGCCTTCCTGACCGTCCAGAGGATGGAGGTTCCCATCGAGTCTCCGGACGACTTGGCCGACCAGACCAACATCGAGTATGGCACCATCCACGGAGGGAGCACCATGACCTTCTTCATGAACTCACGTTATCAGACCTACCAGCGGATGTGGAACTACATGTACTCCAAGCAGCCCAGTGTATTTGTGAAAAGCACAGAGGAGGGCATCGCCCGTGTGGTCAACTCCAAGTACGCCTTTCTGATGGAGAGCACCATGAACGAGTACTACCGCGGCCGCAACTGTAATCTCACAAAGATAGGAGGCCTGCTGGATACCAAGGGCTATGGCATTGGCATGCCACTTGGGTCTCCGTTCAGAGATGAGATCACGCTGGCCATCCTCCAGCTGCAGGAAAATAACAGGCTGGAGATACTGAAGAGGAGATGGTGGGAGGGAGGCCGATGCCCCAAAGAGGAGGACCACCGTGCAAAGGGTCTGGGCATGGAGAACATTGGGGGCATCTTCGTGGTGCTGATCTGTGGCCTCATCATTGCCGTGTTTGTGGCCATTATGGAGTTTGTGTGGTCGACACGGCGCTCTGCAGAGACAGATGAGgtgtctgtctgtcaggagATGATCACAGAGTTCCGAAACGCCGTCTCCTGTAAGAAGACCTCCCGTATGCGCCGCCGTCGGCCCCTCAGCAGCTCAGCAGCCCTGCGTCATCCCACACGCATAGCTCTGGGGGCCCCTCGGCCCCTGCGCCTGGTCCGGGAAATGCGCCTCAGCAACGGCAAGCTGTACAGCGGAGCTGGCCCGCTGACAGGTGGAGCTGGAGGTGGAGCAGGAGGGACGGGGCCTCCCGATCTGGGCCCTGGGCCCCAACGGATTCCAGATGATCCACTAGGGGCCAacaccacccctcctccaccagCCCCTACCCCTGTGATGCTGCCCGCCCGAAGCTGCACCCATGTGCGGATCTGCCAGGAGTGCCGGAGGATCCAGAGCCTAAGATCAGGATCAACCACAACAAGAATACCACCTTCATCTGCACCCTTGCCGAGgctacccccacccccacccccatccTCATCCAACACAGACAGTGAGGGCGGAGGGGGGGCCAGCCCGCGGCGGCATCACCACAGCCCCCCGCCTCATACCTCCCGACCCATTCCACCTCCACAGAACAGCAACACCACAGACCTACTGGGCGACCAGGACTGAGACCAGATGCAATGGGCAGAGTGAGAGGGCTGCAGGGAGCTGGTGAAGTGTGAGGAACATTTGTGCTGTGGAGAGAAACACTGCTTGTTTCCACAGTTTAAATTAATCGGAGAAcaaaagagggagagatggagggacaAAACGTTGAACTCTGCGAGGTCAGCCAATAGAAAATGAGACGACCTTTCAAAAGAAGAATAAAGGAGAGAAACAGTGACCCTTTCTCCAGTTGAGCTTGAGGCCTACAGACAGAACTGGCTACAAGCACGCTGTGAGATGGTCGTCAGTTAAGCTTCTGTAATCATCTCTGGAAAACAGTTCAGTTTGGACAAATCTGAGCGGAAATGCACATGACCAGATGATGGTTTCTATTGGcctcgttttttttctccttactCCCCCTCTCACTTCACCTTTAGATTTGAGGGTTTTGGTTTTCTTCCACTGACATTCCCTGGAAGTTTTCTACCCCTCTAGTAAAATGAAGCCTTGTTGGAGGACATACTGTTTCCGAATGTGattaaaaacagtaactaaaaGACTTCCAGAGAATTattcctgttttctttttcttttgttgtctttttggtTTTGCTACCATTGTTCTAAGTGGGAATTACAGAGTTAAATACAGACTATGTGTGACAATATGGTGGATTATAACATACTAAGAAACTTGACTGCAGCTAATTGTGTCCTAGAGTTTTGTGTCCCTCCCTGCGTCCCATagctgctttttggatgttaTCAGGGAAGGCAGATGAAACAACTTCAAGACAACATAATGCAAACGGTAGCAGAGGAAACTGTCTGCCTTTctttacactgtgtgtgtgtatgtaaacgTGTGCTTCCTGTAAGTCTGTCTGTAACTACTTAAAGTGAGGAGAACCATGTACCCAGCAACAGCACCCTTCTACAAATGTTAGATAATCAGACAGCCAcaaaaagaggaggaagagcaaGAGGCTTTGAAATGTGAAATGAATGTCCCTCGTTATCCTGGGTACCACTTGCCAagcctttatttctttttcaccTGTGTTCACACAGCGtagaagagatagagagaccgGGCGAGGCAGAGCCAGAGAGGCAAGAAAGAGAAGATCCAATagaaagaggcagagagtgaaAAGGACGCTACTGAATTTGAATGAGAAATCCCTAACTGAACTACTTCCATTATTAGATCTGTCCTGATCTGTTAATTCTGGGCATCTTTTAAAGGGGCTTGTTAATGCGCCAGCAAACTGTAGCTACAGCTTCTTCGCTTCTCTCTGTTTAACAGACAGACTTGGCCGTTCACAGTAGAGGCTCCCGCCAGAGTGATAGCCTCAACACAGCCTTGTCAATACAGTCTCAAGCTTTTGATCGCCTAATTACTCCCCTCGGTGACTGGGGACTCATTCAGGAGGGTGTTGAACACAGGGAAACATGCTGATAAATAGATTGAGaagaaatacatgtttttttcactCGGGCTGGGATAGGAACCTGTTGTTAATGTTACAGacctagggccctattttaacgatctgaaacgcaagtatgaaacgcagaacgcaagtagctttgtgggcggatcttgggcactgttgctattataccggcaggataaatgagtctt

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101430 lncRNA upstream 30525 24823026 ~ 24824765 (+) True G75803
TU101425 lncRNA upstream 50437 24800241 ~ 24804853 (+) True G75798
TU101229 lncRNA upstream 321121 24520765 ~ 24534169 (+) True dedd1
TU101604 lncRNA downstream 230183 25115556 ~ 25115757 (+) True G75941
TU101605 lncRNA downstream 258685 25144058 ~ 25144274 (+) True G75942
TU101606 lncRNA downstream 259206 25144579 ~ 25144804 (+) True G75943
XR_005639632.1 lncRNA downstream 449643 25335016 ~ 25335958 (+) True LOC120561670
TU101653 lncRNA downstream 460890 25346263 ~ 25347216 (+) True G75977
XM_039806680.1 mRNA upstream 63734 24771509 ~ 24791556 (+) False znf574
XM_039806682.1 mRNA upstream 63734 24771635 ~ 24791556 (+) False znf574
XM_039806679.1 mRNA upstream 63734 24771816 ~ 24791556 (+) True znf574
XM_039806681.1 mRNA upstream 63734 24773500 ~ 24791556 (+) False znf574
XM_039806407.1 mRNA upstream 87854 24737531 ~ 24767436 (+) True gsk3ab
XM_039805167.1 mRNA downstream 30110 24915483 ~ 24996309 (+) True LOC120561858
XM_039805166.1 mRNA downstream 96587 24981960 ~ 24996309 (+) False LOC120561858
XM_039805168.1 mRNA downstream 96587 24981960 ~ 24992601 (+) False LOC120561858
XM_039805172.1 mRNA downstream 112639 24998012 ~ 25000683 (+) True LOC120561861
XM_039805170.1 mRNA downstream 120402 25005775 ~ 25010474 (+) True LOC120561860
TU101208 other upstream 418471 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 418520 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 800962 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 822845 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 975875 23873916 ~ 23879415 (+) False LOC120563047
TU101448 other downstream 29881 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 606441 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 617227 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1254528 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1922745 26808118 ~ 26815391 (+) True G76315

Expression Profile