RNA id: TU101653


Basic Information

Item Value
RNA id TU101653
length 373
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G75977
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25346263 ~ 25347216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATAGTCAATAATCTTTCAGCGTAGAAGCGGACTTCATCTGCTCGGGCCGCCGTGGTTTCTATCCTCTCGTGTCGGACCAGTCCTGTCAAAATGTTCCGCAGCATGTTGATTCGGGACTGCGGACCCATACCCATCTTCCGGGCCACCCGGCCGTGGGAGATCAACATTTGCAACGTGAGGCGCATCTTGTCCGGTTAGGTTCGCCTGCGTGAATCTGCGACAAACAAATGGAAAACTAAACTAATCGAGAAAATGTTCCCAAGTAAAGCGTATTATCAATTTAACCCGCCCTCTAGCTATCCTACAGCGCAGTTACCTCAATGTAATCACAAAGCCCGAGGTCAGCAATGCGAAGCCCGTGCGAAGCTGA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639632.1 lncRNA upstream 10305 25335016 ~ 25335958 (+) True LOC120561670
TU101606 lncRNA upstream 201459 25144579 ~ 25144804 (+) True G75943
TU101605 lncRNA upstream 201989 25144058 ~ 25144274 (+) True G75942
TU101604 lncRNA upstream 230506 25115556 ~ 25115757 (+) True G75941
TU101431 lncRNA upstream 409045 24874004 ~ 24937218 (+) True G75804
TU101701 lncRNA downstream 26991 25374207 ~ 25376989 (+) True LOC120561674
TU101753 lncRNA downstream 195183 25542399 ~ 25596454 (+) True G76055
TU101801 lncRNA downstream 258934 25606150 ~ 25617478 (+) True G76083
TU101800 lncRNA downstream 263185 25610401 ~ 25617478 (+) False G76083
TU101807 lncRNA downstream 277214 25624430 ~ 25696175 (+) False G76089
XM_039804842.1 mRNA upstream 1571 25294256 ~ 25344692 (+) True tmem145
XM_039804837.1 mRNA upstream 52993 25262018 ~ 25293270 (+) True lipeb
XM_039804838.1 mRNA upstream 52993 25262021 ~ 25293270 (+) False lipeb
XM_039804839.1 mRNA upstream 52993 25262135 ~ 25293270 (+) False lipeb
XM_039804840.1 mRNA upstream 52993 25266417 ~ 25293270 (+) False lipeb
XM_039804847.1 mRNA downstream 904 25348120 ~ 25357859 (+) True LOC120561668
XM_039804846.1 mRNA downstream 9221 25356437 ~ 25357859 (+) False LOC120561668
XM_039804860.1 mRNA downstream 13542 25360758 ~ 25362313 (+) True LOC120561675
XM_039804857.1 mRNA downstream 21113 25368329 ~ 25371056 (+) True LOC120561673
XM_039804859.1 mRNA downstream 27496 25374712 ~ 25380798 (+) False LOC120561674
TU101448 other upstream 357144 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 909444 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 909493 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 1291935 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 1313818 24031390 ~ 24032445 (+) False atn1
TU101741 other downstream 144598 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 155384 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 792685 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1460902 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 1536234 26883450 ~ 26886546 (+) True G76355

Expression Profile