RNA id: TU101701


Basic Information

Item Value
RNA id TU101701
length 1345
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC120561674
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25374207 ~ 25380798 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCATCACAAAATGGTAGATTTTATTGATTGTGCCCTGATTTCacatctctttttctctctctctcacacccacTGTTTCtccttgtttctctctctcagttgcTCTCCCACTGCTTTTCTTTTCAACACTACCCACCACCgtctcctgtctctgtctccttcaaTTTCAGTCTCCCTCTggtttcctctctctcacataGTTCTGTGATGGGAGATCACAGCCTAGGAGTATGTGGAGAGAATATCGTTGATCCAGGGCATCAGTGAGCACACTTTGGTGTAAACGCCCGGGTAGTTGGGTTGAGCACAGCCCTGGCCCCATGAGACAATACCCTGCAGCTCCCCGTTACACACCAGAGGACCACCAGAGTCACCCTCCAGGTATCCAGCACACACCATGCGGTCAGTGATCATGCCGGGGTAGGAACCATCACAGTCCTTGTTAGACAGAATGGGGACTTCCACACACTGAAGTGGGCAGCAGAGACGATCCACTGTTCGTTGATGAGGGAGCCGCCGCAGAAGTGGTAGCCGACATTGAGAGACACCTGCCAGGGTTGAGAGTGGGCTGGACACCGGTAGCCACCCACAATCCTGTCATCTGTaggtgctgcagctgtggtgtaaagaaaatacaaaatgatTAATATTTATCATAGTTACAATTCTTTTTTTACCCTTAAACTGTTAGACACACTGAACATGCTTCACCTGCAGCGCCCAGAAGTGTGACAACAATCAGGCCAATCATCGTGGCTAACTCAAACCTTCCTACGACCAGACTAGATGTGAATGATCACTGCATTTATACATAAACTCCTCCATGTCTTTCCATGcactccctcttcctcctcctccacacctCCATTCCTCCACCCAATTCCCCACACCCACATCCCCAAATCTCCCGCCCCAATCCCTGCCCTGAAAAATAACCTTATCTTCTTATGTGCCACGTTCATCCTTTCATTTAATAAGTGAGCCACATTTGACATAGTATTGGCCTTGgagtgttttctgtgttttttgacAGATCATTTTCTGCACCTATCACCTGCCTATTCGTTTTATGGGTGACACGTGTGTTACTCCCTTTTTAGCAGACAGCACTATGAATTATTGTAACCAGACATATTATGTTACTACATCTTGGTTGAATACAATAGAATTAAATAATTTCATCAGCActaatcagaatcagctttattggccaagtaagCGTGTACAAGAAATTTGACTCTTGATTTTGGTACTTTTGTCAATGTATGTGTGTAACCGGCCTGGCCTCAGTACCGGTTACCTGCGTAGTGTCTAACGTGTGAAGCAGACGACTGGAGACTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101653 lncRNA upstream 26991 25346263 ~ 25347216 (+) True G75977
XR_005639632.1 lncRNA upstream 38249 25335016 ~ 25335958 (+) True LOC120561670
TU101606 lncRNA upstream 229403 25144579 ~ 25144804 (+) True G75943
TU101605 lncRNA upstream 229933 25144058 ~ 25144274 (+) True G75942
TU101604 lncRNA upstream 258450 25115556 ~ 25115757 (+) True G75941
TU101753 lncRNA downstream 165410 25542399 ~ 25596454 (+) True G76055
TU101801 lncRNA downstream 229161 25606150 ~ 25617478 (+) True G76083
TU101800 lncRNA downstream 233412 25610401 ~ 25617478 (+) False G76083
TU101807 lncRNA downstream 247441 25624430 ~ 25696175 (+) False G76089
TU101811 lncRNA downstream 247441 25624430 ~ 25701085 (+) True G76089
XM_039804857.1 mRNA upstream 3151 25368329 ~ 25371056 (+) True LOC120561673
XM_039804860.1 mRNA upstream 11894 25360758 ~ 25362313 (+) True LOC120561675
XM_039804847.1 mRNA upstream 16348 25348120 ~ 25357859 (+) True LOC120561668
XM_039804846.1 mRNA upstream 16348 25356437 ~ 25357859 (+) False LOC120561668
XM_039804842.1 mRNA upstream 29515 25294256 ~ 25344692 (+) True tmem145
XM_039804858.1 mRNA downstream 1289 25378278 ~ 25380798 (+) False LOC120561674
XM_039806603.1 mRNA downstream 23251 25400240 ~ 25422572 (+) True bcl3
XM_039806604.1 mRNA downstream 45861 25422850 ~ 25436271 (+) True ddx61
XM_039806605.1 mRNA downstream 59849 25436838 ~ 25443829 (+) True tomm40
XM_039806610.1 mRNA downstream 102272 25479261 ~ 25480707 (+) True LOC120562741
TU101448 other upstream 385088 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 937388 24435139 ~ 24436819 (+) True G75644
TU101207 other upstream 937437 24435139 ~ 24436770 (+) False G75644
XR_005639925.1 other upstream 1319879 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 1341762 24031390 ~ 24032445 (+) False atn1
TU101741 other downstream 114825 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 125611 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 762912 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 1431129 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 1506461 26883450 ~ 26886546 (+) True G76355

Expression Profile