RNA id: TU101930


Basic Information

Item Value
RNA id TU101930
length 367
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G76193
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 26151993 ~ 26153303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCATGCTCTTTTGTAGACTccaccaatcccagcagtctgCTCTCTGTAGTGTTATCAAAGAAGACATCGCATTGGACAGCTATGATGCAGTTTTCGTCCCTTTCCAACGTTTCTTGAATTGCGACGGATTGATCCATAGTGATTTTTGTGACAACTTCTGCCCCCACGCTTCCCAGACGAAACTATCCGGAGGAGTTTGAGTAACTAGTTACTCTCAAAGTGCACATCAGGAGAAGAGACACTTCAGGGGCCTCGTGTAATCCGACATTATATATTCCTTTTCGAGCCAGAtgttttcctcttcttcttcttcttcttcctccgtTGCTGGCCCGACCCAGTCTGACTGCCACGCACTGATTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101916 lncRNA upstream 39488 26110603 ~ 26112505 (+) True G76180
TU101904 lncRNA upstream 87937 26063033 ~ 26064056 (+) True G76168
TU101890 lncRNA upstream 123246 26028498 ~ 26028747 (+) True G76156
TU101887 lncRNA upstream 125110 26023596 ~ 26026883 (+) True LOC120563146
XR_005639914.1 lncRNA upstream 125115 26024024 ~ 26026878 (+) False LOC120563146
XR_005639908.1 lncRNA downstream 2558 26155861 ~ 26167687 (+) True LOC120563083
TU102007 lncRNA downstream 61778 26215081 ~ 26215365 (+) True G76246
TU102012 lncRNA downstream 132997 26286300 ~ 26286500 (+) True G76251
XR_005639860.1 lncRNA downstream 423409 26576712 ~ 26600111 (+) True LOC120562862
XR_005639858.1 lncRNA downstream 423409 26576712 ~ 26591023 (+) False LOC120562862
XM_039805358.1 mRNA upstream 47309 26088953 ~ 26104684 (+) True LOC120561982
XM_039807266.1 mRNA upstream 83639 26065023 ~ 26068354 (+) True smpdl3b
XM_039807267.1 mRNA upstream 83639 26065042 ~ 26068354 (+) False smpdl3b
XM_039807263.1 mRNA upstream 93562 26050653 ~ 26058431 (+) True themis2
XM_039807116.1 mRNA downstream 15161 26168464 ~ 26172414 (+) True LOC120563082
XM_039807117.1 mRNA downstream 15174 26168477 ~ 26172414 (+) False LOC120563082
XM_039806565.1 mRNA downstream 163564 26316867 ~ 26427652 (+) True LOC120562714
XM_039806477.1 mRNA downstream 458683 26611986 ~ 26613382 (+) True LOC120562650
XM_039806906.1 mRNA downstream 469044 26622347 ~ 26634300 (+) False csf3r
TU101929 other upstream 9366 26139901 ~ 26142627 (+) True G76192
TU101746 other upstream 647941 25502600 ~ 25504052 (+) True apoc2
TU101741 other upstream 658836 25491814 ~ 25493157 (+) False apoc1
TU101448 other upstream 1162874 24915254 ~ 24989119 (+) False LOC120561858
TU101208 other upstream 1715174 24435139 ~ 24436819 (+) True G75644
TU102095 other downstream 654815 26808118 ~ 26815391 (+) True G76315
TU102152 other downstream 730147 26883450 ~ 26886546 (+) True G76355
TU102237 other downstream 1131235 27284538 ~ 27288457 (+) True G76417
TU102349 other downstream 1795580 27948883 ~ 27952580 (+) True G76511
TU102453 other downstream 2088480 28241783 ~ 28245161 (+) True G76581

Expression Profile