RNA id: TU102268


Basic Information

Item Value
RNA id TU102268
length 224
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G76445
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27555844 ~ 27565331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCTCTGTGTAGATGGGGTTCCTGGAGAGCTCCGACAGATGGACAAATTCGAGGTGAAGGGTCCCAAACTCAGCCAGGATGCTGCTCCCAGCTGAGGCCCAGCCCCAACTCCAACTGGTGCCACTGCTCCCCAGGTTGATGACTCCTCGGGGGATTCCTGTTGGCGTGTTGAAGGCAGGCAGCAGCTTCTCTCCCAGCTCCATTACTTTACTCTTGTACAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102274 lncRNA upstream 34331 27520692 ~ 27521513 (+) True G76451
TU102273 lncRNA upstream 53487 27501956 ~ 27502357 (+) True G76450
TU102246 lncRNA upstream 192832 27362279 ~ 27363012 (+) True G76426
TU102257 lncRNA upstream 225804 27327078 ~ 27330040 (+) True G76437
TU102239 lncRNA upstream 264412 27290168 ~ 27291432 (+) True G76419
TU102287 lncRNA downstream 219864 27785195 ~ 27790404 (+) True G76464
TU102288 lncRNA downstream 227441 27792772 ~ 27793211 (+) True G76465
TU102289 lncRNA downstream 229221 27794552 ~ 27794873 (+) True G76466
TU102290 lncRNA downstream 238431 27803762 ~ 27803961 (+) True G76467
TU102291 lncRNA downstream 240287 27805618 ~ 27805835 (+) True G76468
XM_039805412.1 mRNA upstream 200011 27351851 ~ 27355833 (+) True pnrc2
XM_039804702.1 mRNA upstream 250838 27303310 ~ 27305006 (+) True LOC120561567
XM_039804667.1 mRNA upstream 540742 27013093 ~ 27015102 (+) True utp11
XM_039807189.1 mRNA upstream 600560 26943236 ~ 26955284 (+) True rspo1
XM_039805832.1 mRNA upstream 666009 26886568 ~ 26889835 (+) True dnali1
XM_039807243.1 mRNA downstream 302113 27867444 ~ 27885464 (+) True fam110d
XM_039804991.1 mRNA downstream 397359 27962690 ~ 27983714 (+) True ago1
XM_039804992.1 mRNA downstream 397367 27962698 ~ 27983714 (+) False ago1
XM_039804993.1 mRNA downstream 418722 27984053 ~ 28027526 (+) True LOC120561771
XM_039806614.1 mRNA downstream 482312 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
TU102237 other upstream 267387 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 669298 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 740453 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 1413217 26139901 ~ 26142627 (+) True G76192
TU101746 other upstream 2051792 25502600 ~ 25504052 (+) True apoc2
TU102349 other downstream 383552 27948883 ~ 27952580 (+) True G76511
TU102453 other downstream 676452 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 717945 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 955368 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 988241 28553572 ~ 28569866 (+) True G76714

Expression Profile